SDAP Home Page
SDAP Overview
SDAP All
SDAP Food
Use SDAP All
Search SDAP All
List SDAP All
SDAP Food
SDAP Tools
FAO/WHO Allergenicity Test
FASTA Search in SDAP
Peptide Match
Peptide Similarity
Peptide-Protein PD Index
Aller_ML, Allergen Markup Language
List SDAP
About SDAP
General Information
Manual
FAQ
Publications
Who Are We
Advisory Board
Allergy Links
Our Software Tools
MPACK
FANTOM
GETAREA
NOAH/DIAMOD
MASIA
PCPMer
InterProSurf
EpiSearch
Protein Databases
PDB
MMDB - Entrez
SWISS-PROT
NCBI - Entrez
PIR
Protein Classification
CATH
CE
FSSP
iProClass
ProtoMap
SCOP
TOPS
VAST
Bioinformatics Servers
@TOME
BLAST @ NCBI
BLAST @ PIR
FASTA @ PIR
Peptide Match @ PIR
ClustalW @ BCM
ClustalW @ EMBL - EBI
ClustalW @ PIR
Bioinformatics Tools
Cn3D
MolMol
Bioinformatics Links
Bioinformatics Links Directory
|
SDAP - All Allergens
Full FASTA alignment
Sequence name: Query sequence: PAGPFGIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTLDDEFDFED DMENPQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLG QQGQQGPQVQHVISRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS
Alignment made with FASTA 3.45 As explained in the FASTA manual, the bit score is equivalent to the bit score reported by BLAST. A 1 bit increase in score corresponds to a 2-fold reduction in expectation, and a 10-bit increase implies 1000-fold lower expectation. Sequences with E values < 0.01 are almost always homologous.
Alignment 1 Sequence 1: Sequence 2: Allergen Sin a 1, Sequence: CAA62911 Sequence identity: 100.00 (145/145) Sequence 1 PAGPFGIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTLDDEFDFED PAGPFGIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTLDDEFDFED Sequence 2 PAGPFGIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTLDDEFDFED
Sequence 1 DMENPQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLG DMENPQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLG Sequence 2 DMENPQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLG
Sequence 1 QQGQQGPQVQHVISRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS QQGQQGPQVQHVISRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS Sequence 2 QQGQQGPQVQHVISRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS
Alignment 2 Sequence 1: Sequence 2: Allergen Sin a 1, Sequence: CAA62908 Sequence identity: 99.31 (144/145) Sequence 1 PAGPFGIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTLDDEFDFED PAGPFGIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTLDDEFDFED Sequence 2 PAGPFGIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTLDDEFDFED
Sequence 1 DMENPQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLG DMENPQGPQQ-PPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLG Sequence 2 DMENPQGPQQKPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLG
Sequence 1 QQGQQGPQVQHVISRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS QQGQQGPQVQHVISRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS Sequence 2 QQGQQGPQVQHVISRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS
Alignment 3 Sequence 1: Sequence 2: Allergen Sin a 1, Sequence: CAA62912 Sequence identity: 97.24 (141/145) Sequence 1 PAGPFGIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTLDDEFDFED PAGPF-IPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTLDDEFDFED Sequence 2 PAGPFRIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTLDDEFDFED
Sequence 1 DMENPQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLG DMENPQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQL- Sequence 2 DMENPQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLE
Sequence 1 QQGQQGPQVQHVISRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS QQGQQGP--QHVISRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS Sequence 2 QQGQQGPHLQHVISRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS
Alignment 4 Sequence 1: Sequence 2: Allergen Sin a 1, Sequence: AAB25214 Sequence identity: 97.24 (141/145) Sequence 1 PAGPFGIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTLDDEFDFED PAGPF-IPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTLDDEFDFED Sequence 2 PAGPFRIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTLDDEFDFED
Sequence 1 DMENPQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLG DMENPQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLG Sequence 2 DMENPQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLG
Sequence 1 QQGQQGPQVQHVISRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS QQGQQGP--QHVISRIYQTATHLPKVCNI-QVSVCPFKKTMPGPS Sequence 2 QQGQQGPHLQHVISRIYQTATHLPKVCNIRQVSVCPFKKTMPGPS
Alignment 5 Sequence 1: Sequence 2: Allergen Sin a 1, Sequence: CAA62909 Sequence identity: 95.86 (139/145) Sequence 1 PAGPFGIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTLDDEFDFED PAGPFGIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTLDDEFDFED Sequence 2 PAGPFGIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTLDDEFDFED
Sequence 1 DMENPQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLG DMENPQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQL- Sequence 2 DMENPQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLE
Sequence 1 QQGQQGPQVQHVISRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS QQGQQGP--QHVISRIYQTATHLP-VCNI-QVSVCPF-KTMPGPS Sequence 2 QQGQQGPHLQHVISRIYQTATHLPRVCNIRQVSVCPFQKTMPGPS
Alignment 6 Sequence 1: Sequence 2: Allergen Sin a 1, Sequence: CAA62910 Sequence identity: 95.86 (139/145) Sequence 1 PAGPFGIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTLDDEFDFED PAGPF-IPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTL--EFDFED Sequence 2 PAGPFRIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTLEGEFDFED
Sequence 1 DMENPQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLG DMENPQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQL- Sequence 2 DMENPQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLE
Sequence 1 QQGQQGPQVQHVISRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS QQGQQGP--QHVISRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS Sequence 2 QQGQQGPHLQHVISRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS
Alignment 7 Sequence 1: Sequence 2: Allergen Bra r 1, Sequence: Q42473 Sequence identity: 86.90 (126/145) Sequence 1 -------------------------------------PAGPFGIPKCRKE -------------------------------------PAGPF-IPKCRKE Sequence 2 MANKLFLVSATLALFFLLTNASVYRTGSEFDEHDATNPAGPFRIPKCRKE
Sequence 1 FQQAQHLRACQQWLHKQAMQSGSGPSWTLDDEFDFEDDMENPQGPQQRPP FQQAQHL-ACQQWLHKQAMQSGSGPSWTLD-EFDFE-DMEN-QGPQQ-PP Sequence 2 FQQAQHLKACQQWLHKQAMQSGSGPSWTLDGEFDFEEDMENTQGPQQEPP
Sequence 1 LLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLGQQGQQGPQVQHVI LLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQ-GQQ-----Q-Q-VI Sequence 2 LLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQ-GQQ----QQMQQVI
Sequence 1 SRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS- SRIYQT-THLP-VCNI-QVS-CPF-KTMPGPS- Sequence 2 SRIYQTSTHLPRVCNIRQVSICPFQKTMPGPSY
Alignment 8 Sequence 1: Sequence 2: Allergen Sin a 1, Sequence: P15322 Sequence identity: 86.21 (125/145) Sequence 1 PAGPFGIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTLDDEFDFED PAGPF-IPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPS----------- Sequence 2 PAGPFRIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPS-----------
Sequence 1 DMENPQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLG ----PQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQL- Sequence 2 ----PQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLE
Sequence 1 QQGQQGPQVQHVISRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS QQGQQGP---HVISRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS Sequence 2 QQGQQGP---HVISRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS
Alignment 9 Sequence 1: Sequence 2: Allergen Bra j 1, Sequence: P80207 Sequence identity: 79.31 (115/145) Sequence 1 PAGPFGIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTLDDEFDFED -AGPF--P-CRKEFQQAQHLRACQQWLHKQAMQSGSGP------------ Sequence 2 -AGPFRFPRCRKEFQQAQHLRACQQWLHKQAMQSGSGPQ-----------
Sequence 1 DMENPQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLG ----PQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQ-RQQ-- Sequence 2 ----PQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQIRQQGQ
Sequence 1 QQGQQGPQVQHVISRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS QQGQQG-Q-QH-ISRIYQTATHLP-VCNIP-VS-CPF-KTMPGPS Sequence 2 QQGQQGQQLQHEISRIYQTATHLPRVCNIPRVSICPFQKTMPGPS
Alignment 10 Sequence 1: Sequence 2: Allergen Bra n 1, Sequence: P80208 Sequence identity: 81.38 (118/145) Sequence 1 PAGPFGIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTLDDEFDFED -AGPF-IPKCRKEFQQAQHLRACQQWLHKQAMQSGSGP------------ Sequence 2 SAGPFRIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGP------------
Sequence 1 DMENPQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLG -----QGPQQRPPLLQQCCNELHQEEPLCVCPTLKGAS-AVKQQVRQQ-- Sequence 2 -----QGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASRAVKQQVRQQ--
Sequence 1 QQGQQGPQVQHVISRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS -QGQQG-Q-Q-VISRIYQTATHLPKVCNIPQVSVCPF-KTMPGPS Sequence 2 -QGQQGQQLQQVISRIYQTATHLPKVCNIPQVSVCPFQKTMPGPS
|