SDAP Home Page
SDAP Overview
SDAP All
SDAP Food
Use SDAP All
Search SDAP All
List SDAP All
SDAP Food
SDAP Tools
FAO/WHO Allergenicity Test
FASTA Search in SDAP
Peptide Match
Peptide Similarity
Peptide-Protein PD Index
Aller_ML, Allergen Markup Language
List SDAP
About SDAP
General Information
Manual
FAQ
Publications
Who Are We
Advisory Board
Allergy Links
Our Software Tools
MPACK
FANTOM
GETAREA
NOAH/DIAMOD
MASIA
PCPMer
InterProSurf
EpiSearch
Protein Databases
PDB
MMDB - Entrez
SWISS-PROT
NCBI - Entrez
PIR
Protein Classification
CATH
CE
FSSP
iProClass
ProtoMap
SCOP
TOPS
VAST
Bioinformatics Servers
@TOME
BLAST @ NCBI
BLAST @ PIR
FASTA @ PIR
Peptide Match @ PIR
ClustalW @ BCM
ClustalW @ EMBL - EBI
ClustalW @ PIR
Bioinformatics Tools
Cn3D
MolMol
Bioinformatics Links
Bioinformatics Links Directory
|
SDAP - All Allergens
Full FASTA alignment
Sequence name: Query sequence: MKPLVKLFLLFCLVGIVLSRPMPEDEEPVAEGGDEETTDDAGGDGGEEEN EGEEHAGDEDAGGEDTGKEENTGHEDAGEEDAGEEDAGEEDAEKEEGEKE DAGDDAGSDDGEEDSTGGDEGEANAEDSKGSEKNDPADTYRQVVALLDKD TKVDHIQSEYLRSALNNDLQSEVRVPVVEAIGRIGDYSKIQGCFKSMGKD VKKVISEEEKKFKSCMSKKKSEYQCSEDSFAAAKSKLSPITSKIKSCVSS KGR
Alignment made with FASTA 3.45 As explained in the FASTA manual, the bit score is equivalent to the bit score reported by BLAST. A 1 bit increase in score corresponds to a 2-fold reduction in expectation, and a 10-bit increase implies 1000-fold lower expectation. Sequences with E values < 0.01 are almost always homologous.
Alignment 1 Sequence 1: Sequence 2: Allergen Aed a 3, Sequence: O01949 Sequence identity: 100.00 (253/253) Sequence 1 MKPLVKLFLLFCLVGIVLSRPMPEDEEPVAEGGDEETTDDAGGDGGEEEN MKPLVKLFLLFCLVGIVLSRPMPEDEEPVAEGGDEETTDDAGGDGGEEEN Sequence 2 MKPLVKLFLLFCLVGIVLSRPMPEDEEPVAEGGDEETTDDAGGDGGEEEN
Sequence 1 EGEEHAGDEDAGGEDTGKEENTGHEDAGEEDAGEEDAGEEDAEKEEGEKE EGEEHAGDEDAGGEDTGKEENTGHEDAGEEDAGEEDAGEEDAEKEEGEKE Sequence 2 EGEEHAGDEDAGGEDTGKEENTGHEDAGEEDAGEEDAGEEDAEKEEGEKE
Sequence 1 DAGDDAGSDDGEEDSTGGDEGEANAEDSKGSEKNDPADTYRQVVALLDKD DAGDDAGSDDGEEDSTGGDEGEANAEDSKGSEKNDPADTYRQVVALLDKD Sequence 2 DAGDDAGSDDGEEDSTGGDEGEANAEDSKGSEKNDPADTYRQVVALLDKD
Sequence 1 TKVDHIQSEYLRSALNNDLQSEVRVPVVEAIGRIGDYSKIQGCFKSMGKD TKVDHIQSEYLRSALNNDLQSEVRVPVVEAIGRIGDYSKIQGCFKSMGKD Sequence 2 TKVDHIQSEYLRSALNNDLQSEVRVPVVEAIGRIGDYSKIQGCFKSMGKD
Sequence 1 VKKVISEEEKKFKSCMSKKKSEYQCSEDSFAAAKSKLSPITSKIKSCVSS VKKVISEEEKKFKSCMSKKKSEYQCSEDSFAAAKSKLSPITSKIKSCVSS Sequence 2 VKKVISEEEKKFKSCMSKKKSEYQCSEDSFAAAKSKLSPITSKIKSCVSS
Sequence 1 KGR KGR Sequence 2 KGR
Alignment 2 Sequence 1: Sequence 2: Allergen Aed al 3.01, Sequence: AAV90693 Sequence identity: 68.38 (173/253) Sequence 1 MKPLVKLFLLFCLVGIVLSRPMPEDEE-------P------VAEGGDEET MKPL-KLF--FCL-GIVLSRPMPE-EE-------P--------EGG-E-T Sequence 2 MKPLAKLFMVFCLIGIVLSRPMPEGEEGEGEEESPDDASGDETEGGEEKT
Sequence 1 TDDAGGDGGEEEN-----EGEEHAGDEDAGGEDTGKEENTGHEDAGEEDA -D-A--DGGEEE-------G-E-A--EDAGG-D-G-E---G----GE--- Sequence 2 DDGASEDGGEEESKADEEDGGENADGEDAGGDDAGGENADGENTDGENTD
Sequence 1 GEEDAGEE-DAEKEEGEKEDAGDDAGSDDGEEDSTGGDEGEANAEDSKGS GE---GE--D-E--EG-K-D-GDD---D---E-STGGDEG--NA----G- Sequence 2 GENTDGENADGEDAEGSK-DEGDDSEGDGSKEESTGGDEGGDNAGGGEGG
Sequence 1 EKNDPADTYRQVVALLDKDTKVDHIQSEYLRSALNNDLQSEVRVPVVEAI --NDP--TY--VVA-LDKDTKVD-IQSEYLRSALNNDLQSEVR-PVVEAI Sequence 2 GENDPVNTYHKVVAILDKDTKVDNIQSEYLRSALNNDLQSEVRNPVVEAI
Sequence 1 GRIGDYSKIQGCFKSMGKDVKKVISEEEKKFKSCMSKKKSEYQCSEDSFA -R-G--SKI-GCFKSMG-DVKKVI-EE-K-FK-CM-KKKSEY-CSEDSFA Sequence 2 SRLGSFSKIEGCFKSMGSDVKKVIDEEQKAFKDCMTKKKSEYECSEDSFA
Sequence 1 AAKSKLSPITSKIKSCVSSKGR -AK-KLSPITSKIKSCVSSKG- Sequence 2 SAKGKLSPITSKIKSCVSSKGQ
|