SDAP Home Page
SDAP Overview
SDAP All
SDAP Food
Use SDAP All
Search SDAP All
List SDAP All
SDAP Food
SDAP Tools
FAO/WHO Allergenicity Test
FASTA Search in SDAP
Peptide Match
Peptide Similarity
Peptide-Protein PD Index
Aller_ML, Allergen Markup Language
List SDAP
About SDAP
General Information
Manual
FAQ
Publications
Who Are We
Advisory Board
Allergy Links
Our Software Tools
MPACK
FANTOM
GETAREA
NOAH/DIAMOD
MASIA
PCPMer
InterProSurf
EpiSearch
Protein Databases
PDB
MMDB - Entrez
SWISS-PROT
NCBI - Entrez
PIR
Protein Classification
CATH
CE
FSSP
iProClass
ProtoMap
SCOP
TOPS
VAST
Bioinformatics Servers
@TOME
BLAST @ NCBI
BLAST @ PIR
FASTA @ PIR
Peptide Match @ PIR
ClustalW @ BCM
ClustalW @ EMBL - EBI
ClustalW @ PIR
Bioinformatics Tools
Cn3D
MolMol
Bioinformatics Links
Bioinformatics Links Directory
|
SDAP - All Allergens
Full FASTA alignment
Sequence name: Query sequence: MSCIAVEAVLLGILLYIPIVLSDDRAPIPSNSAQLNSWFDGIIQPVAVRK ATMDPALVTAEGQTKVIKLKSDGSGDFKSINEAIKSIPDDNTKRVILSLA PGNYSEKVKIGMYKHYITFYGEDPNNMPILVFGGTAAEYGTVDSATLIVE SNYFSAVNLKIVNSAPRPDGKRVGAQAAALRISGDKASFYNVKIYGFQDT LCDDKGKHFYKDCYIEGTVDFIFGSGKSIFLNTELHAVPGDQPAIITAQA RKTDSEDTGYYFVNCRVTGGGAFLGRSWMPAAKVVFAYTEMVDAIHPEGW ILVKPEHESTVRFSEYNNKGPGANMEKRAKFVKRLSDAEAKQSISLGSIE ASKWLLPPRVVGLP
Alignment made with FASTA 3.45 As explained in the FASTA manual, the bit score is equivalent to the bit score reported by BLAST. A 1 bit increase in score corresponds to a 2-fold reduction in expectation, and a 10-bit increase implies 1000-fold lower expectation. Sequences with E values < 0.01 are almost always homologous.
Alignment 1 Sequence 1: Sequence 2: Allergen Ole e 11.0101, Sequence: ACZ57582 Sequence identity: 100.00 (364/364) Sequence 1 MSCIAVEAVLLGILLYIPIVLSDDRAPIPSNSAQLNSWFDGIIQPVAVRK MSCIAVEAVLLGILLYIPIVLSDDRAPIPSNSAQLNSWFDGIIQPVAVRK Sequence 2 MSCIAVEAVLLGILLYIPIVLSDDRAPIPSNSAQLNSWFDGIIQPVAVRK
Sequence 1 ATMDPALVTAEGQTKVIKLKSDGSGDFKSINEAIKSIPDDNTKRVILSLA ATMDPALVTAEGQTKVIKLKSDGSGDFKSINEAIKSIPDDNTKRVILSLA Sequence 2 ATMDPALVTAEGQTKVIKLKSDGSGDFKSINEAIKSIPDDNTKRVILSLA
Sequence 1 PGNYSEKVKIGMYKHYITFYGEDPNNMPILVFGGTAAEYGTVDSATLIVE PGNYSEKVKIGMYKHYITFYGEDPNNMPILVFGGTAAEYGTVDSATLIVE Sequence 2 PGNYSEKVKIGMYKHYITFYGEDPNNMPILVFGGTAAEYGTVDSATLIVE
Sequence 1 SNYFSAVNLKIVNSAPRPDGKRVGAQAAALRISGDKASFYNVKIYGFQDT SNYFSAVNLKIVNSAPRPDGKRVGAQAAALRISGDKASFYNVKIYGFQDT Sequence 2 SNYFSAVNLKIVNSAPRPDGKRVGAQAAALRISGDKASFYNVKIYGFQDT
Sequence 1 LCDDKGKHFYKDCYIEGTVDFIFGSGKSIFLNTELHAVPGDQPAIITAQA LCDDKGKHFYKDCYIEGTVDFIFGSGKSIFLNTELHAVPGDQPAIITAQA Sequence 2 LCDDKGKHFYKDCYIEGTVDFIFGSGKSIFLNTELHAVPGDQPAIITAQA
Sequence 1 RKTDSEDTGYYFVNCRVTGGGAFLGRSWMPAAKVVFAYTEMVDAIHPEGW RKTDSEDTGYYFVNCRVTGGGAFLGRSWMPAAKVVFAYTEMVDAIHPEGW Sequence 2 RKTDSEDTGYYFVNCRVTGGGAFLGRSWMPAAKVVFAYTEMVDAIHPEGW
Sequence 1 ILVKPEHESTVRFSEYNNKGPGANMEKRAKFVKRLSDAEAKQSISLGSIE ILVKPEHESTVRFSEYNNKGPGANMEKRAKFVKRLSDAEAKQSISLGSIE Sequence 2 ILVKPEHESTVRFSEYNNKGPGANMEKRAKFVKRLSDAEAKQSISLGSIE
Sequence 1 ASKWLLPPRVVGLP ASKWLLPPRVVGLP Sequence 2 ASKWLLPPRVVGLP
Alignment 2 Sequence 1: Sequence 2: Allergen Sal k 1.0301, Sequence: AAX11262 Sequence identity: 54.12 (197/364) Sequence 1 MSCIAVEAVLLGILLYIPIVLSDDRAPIPSNSAQLNSWFDGIIQPVAVRK --------------------------PIP-N-A-L-SWF-G---PV---K Sequence 2 -------------------------QPIPPNPAELESWFQGAVKPVSEQK
Sequence 1 ATMDPALVTAE-GQTKVIKLKSDGSGDFKSINEAIKSIPDDNTKRVILSL ----P--V-AE-G----I----DGSG-FK-I--A-K-----NTKRVI--- Sequence 2 G-LEPSVVQAESGGVETIEVRQDGSGKFKTISDAVKHVKVGNTKRVIITI
Sequence 1 APGNYSEKVKIGMYKHYITFYGEDPNNMPILVFGGTAAEYGTVDSATLIV -PG-Y-EKVKI-----YIT-YG-DP-N-P---F-GTAAE-GTVDSATLIV Sequence 2 GPGEYREKVKIERLHPYITLYGIDPKNRPTITFAGTAAEFGTVDSATLIV
Sequence 1 ESNYFSAVNLKIVNSAPRPDGKRVGAQAAALRISGDKASFYNVKIYGFQD ES-YF---NL---NSAPRPDGKR-GA-A-ALRISGD-A-FYN-K--GFQD Sequence 2 ESDYFVGANLIVSNSAPRPDGKRKGARASALRISGDRAAFYNCKFTGFQD
Sequence 1 TLCDDKGKHFYKDCYIEGTVDFIFGSGKSIFLNTELHAVPGDQPAIITAQ T-CDDKG-H--KDCYIEGTVDFIFG---S--LNTELH-VPGD--A-ITA- Sequence 2 TVCDDKGNHLFKDCYIEGTVDFIFGEARSLYLNTELHVVPGDPMAMITAH
Sequence 1 ARKTDSEDTGYYFVNCRVTGGG--AFLGRSWMPAAKVVFAYTEMVDAIHP ARK------GY-FV-C-VTG-G--A-LGR-W--AA-VVF-Y----DA--P Sequence 2 ARKNADGVGGYSFVHCKVTGTGGTALLGRAWFEAARVVFSYCNLSDAVKP
Sequence 1 EGWILV-KPEHESTVRFSEYNNKGPGANMEKRAKFVKRLSDAEAKQSISL EGW----KP----T--F-EY-N-GPGA---KR----K-L--A-AK---SL Sequence 2 EGWSDNNKPAAQKTIFFGEYKNTGPGAAADKRVPYTKQLTEADAKTFTSL
Sequence 1 GSIEASKWLLPPRVVGLP --IEA-KWLLPP--V--- Sequence 2 EYIEAAKWLLPPPKV---
Alignment 3 Sequence 1: Sequence 2: Allergen Sal k 1.0201, Sequence: AAT99258 Sequence identity: 55.22 (201/364) Sequence 1 MSCIAVEAVLLGILLYIPIVLSDDRAPIPSNSAQLNSWFDGIIQPVAVRK -----V---L-G--L-I-I--------IP-N-A-L-SWF-G---PV---K Sequence 2 -MEEHVSMLLVGFVL-INIAFTSIAQLIPPNPAELESWFQGAVKPVSEQK
Sequence 1 ATMDPALVTAE-GQTKVIKLKSDGSGDFKSINEAIKSIPDDNTKRVILSL ----P--V--E-G----I----DGSG-FK-I--A-K-----NTKRVI--- Sequence 2 G-LEPSVVQTESGGVETIEVRQDGSGKFKTISDAVKHVKVGNTKRVIITI
Sequence 1 APGNYSEKVKIGMYKHYITFYGEDPNNMPILVFGGTAAEYGTVDSATLIV -PG-Y-EKVKI-----YIT-YG-DP-N-P---F-GTAAE-GTVDSAT-IV Sequence 2 GPGEYREKVKIERLHPYITLYGIDPKNRPTITFAGTAAEFGTVDSATVIV
Sequence 1 ESNYFSAVNLKIVNSAPRPDGKRVGAQAAALRISGDKASFYNVKIYGFQD ES-Y-----L---NSAPRPDGKR-GAQA-ALRISGD-A-FYN-K--GFQD Sequence 2 ESDYSVGAHLIVTNSAPRPDGKRKGAQAGALRISGDRAAFYNCKFTGFQD
Sequence 1 TLCDDKGKHFYKDCYIEGTVDFIFGSGKSIFLNTELHAVPGDQPAIITAQ T-CDDKG-HF--DCY-EGTVDFIFG---S--LNTELH-VPGD--A-ITA- Sequence 2 TVCDDKGNHFFTDCYTEGTVDFIFGEARSLYLNTELHVVPGDPMAMITAH
Sequence 1 ARKTDSEDTGYYFVNCRVTG-GG-AFLGRSWMPAAKVVFAYTEMVDAIHP ARK------GY-FV-C-VTG-GG-A-LGR-W--AA-VVF-Y----DA--P Sequence 2 ARKNADGVGGYSFVHCKVTGTGGTALLGRAWFDAARVVFSYCNLSDAAKP
Sequence 1 EGWILV-KPEHESTVRFSEYNNKGPGANMEKRAKFVKRLSDAEAKQSISL EGW----KPE---T--F-EY-N-GPGA---KRA---K-L--A-AK---SL Sequence 2 EGWSDNNKPEAQKTILFGEYKNTGPGAAPDKRAPYTKQLTEADAKTFTSL
Sequence 1 GSIEASKWLLPPRVVGLP --IEA-KWLLPP--V--- Sequence 2 EYIEAAKWLLPPPKV---
Alignment 4 Sequence 1: Sequence 2: Allergen Sal k 1.0302, Sequence: AAX11261 Sequence identity: 53.57 (195/364) Sequence 1 MSCIAVEAVLLGILLYIPIVLSDDRAPIPSNSAQLNSWFDGIIQPVAVRK --------------------------PIP-N-A-L-SWF-G---PV---K Sequence 2 -------------------------QPIPPNPAELESWFQGAVKPVSEQK
Sequence 1 ATMDPALVTAE-GQTKVIKLKSDGSGDFKSINEAIKSIPDDNTKRVILSL ----P--V-AE-G----I----DGSG-FK-I--A-K-----NTKRVI--- Sequence 2 G-LEPSVVQAESGGVETIEVRQDGSGKFKTISDAVKHVKVGNTKRVIITI
Sequence 1 APGNYSEKVKIGMYKHYITFYGEDPNNMPILVFGGTAAEYGTVDSATLIV -PG-Y-EKVKI-----YIT-YG-DP-N-P---F-GTAAE-GTVDSATLIV Sequence 2 GPGEYREKVKIEGLHPYITLYGIDPKNRPTITFAGTAAEFGTVDSATLIV
Sequence 1 ESNYFSAVNLKIVNSAPRPDGKRVGAQAAALRISGDKASFYNVKIYGFQD ES-YF---NL---NSAPRP-GKR-GAQA-ALRISGD-A-FYN-K--GFQD Sequence 2 ESDYFVGANLIVSNSAPRPAGKRKGAQASALRISGDRAAFYNCKFTGFQD
Sequence 1 TLCDDKGKHFYKDCYIEGTVDFIFGSGKSIFLNTELHAVPGDQPAIITAQ T-CDDKG-H--KDCYIEGTVD-IFG---S--LNTELH-VPGD--A-ITA- Sequence 2 TVCDDKGNHLFKDCYIEGTVDLIFGEARSLYLNTELHVVPGDPMAMITAH
Sequence 1 ARKTDSEDTGYYFVNCRVTGGG--AFLGRSWMPAAKVVFAYTEMVDAIHP ARK------GY-FV-C-VTG-G--A-LGR-W--AA-VVF-Y----DA--P Sequence 2 ARKNADGVGGYSFVHCKVTGTGGTALLGRAWFEAARVVFSYCNLSDAVKP
Sequence 1 EGWILV-KPEHESTVRFSEYNNKGPGANMEKRAKFVKRLSDAEAKQSISL EGW----KP----T--F-EY-N-GPGA---KR----K-L--A-AK---SL Sequence 2 EGWSDNNKPAAQKTIFFGEYKNTGPGAAADKRVPYTKQLTEADAKTFTSL
Sequence 1 GSIEASKWLLPPRVVGLP --IEA-KWL-PP--V--- Sequence 2 EYIEAAKWLPPPPKV---
Alignment 5 Sequence 1: Sequence 2: Allergen Act d 7.0101, Sequence: P85076 Sequence identity: 24.73 (90/364) Sequence 1 MSCIAVEAVLLGILLYIPIVLSDDRAPIPSNSAQLNSWFDGIIQPVAVRK -------------------------------------------------- Sequence 2 --------------------------------------------------
Sequence 1 ATMDPALVTAEGQTKVIKLKSDGSGDFKSINEAIKSIPDDNTKRVILSLA ---------------------DGSG-F-----A-----D--T-R------ Sequence 2 -------TAVTDIVPDVVVAKDGSGNFTTVGAAVAAAKDSSTARFVIYIK
Sequence 1 PGNYSEKVKIGMYKHYITFYGEDPNNMPILVFGGTAAEYGTVDSATLIVE -G-Y-E-V-----K----F-G-------I-----------T--S-T--V- Sequence 2 EGAYFEYVDVDKKKTNLMFIGDGIGKTWIKGNRSVVDGWTTFRSSTVAVV
Sequence 1 SNYFSAVNLKIVNSAPRPDGKRVGAQAAALRISGDKASFYNVKIYGFQDT ---F-A------N-A--P-------QA-ALR---D---FY-----G-QDT Sequence 2 GTGFIARGISFENYAG-PSKH----QAVALRSGADFSAFYQCSFVGYQDT
Sequence 1 LCDDKGKHFYKDCYIEGTVDFIFGSGKSIFLNTELHAV-PGD-QPAIITA L-------FY--C---GT-DFIFG----------L-A--P---Q--I-TA Sequence 2 LYVHSLRQFYSECDVYGTIDFIFGNAAAVLQKCNLYARKPNENQKNIFTA
Sequence 1 QARKTDSEDTGYYFVNCRVTGGG----------AFLGRSWMPAAKVVFAY Q-R------TG----NC-V----------------LGR-W------VF-- Sequence 2 QGRDDPNQNTGISILNCKVAAAADLIPVLSSFKTYLGRPWKEYSRTVFLL
Sequence 1 TEMVDAIHPEGWILVKPEHE-STVRFSEYNNKGPGANMEKRAK---FVKR --M---I-P-GW----------T----EY-N-GPG-N---R--------- Sequence 2 SQMESLIDPAGWLEWSGDFALTTLYYREYKNTGPGSNTTARVTWPGYAVT
Sequence 1 LSDAEAKQSISLGS-IEASKWLLPPRVVGLP--- ----E--Q----G--I--S-WL------------ Sequence 2 TNETEVIQ-FTVGNFIQGSQWLTSYNIPVYLNLT
|