SDAP Home Page
SDAP Overview
SDAP All
SDAP Food
Use SDAP All
Search SDAP All
List SDAP All
SDAP Food
SDAP Tools
FAO/WHO Allergenicity Test
FASTA Search in SDAP
Peptide Match
Peptide Similarity
Peptide-Protein PD Index
Aller_ML, Allergen Markup Language
List SDAP
About SDAP
General Information
Manual
FAQ
Publications
Who Are We
Advisory Board
Allergy Links
Our Software Tools
MPACK
FANTOM
GETAREA
NOAH/DIAMOD
MASIA
PCPMer
InterProSurf
EpiSearch
Protein Databases
PDB
MMDB - Entrez
SWISS-PROT
NCBI - Entrez
PIR
Protein Classification
CATH
CE
FSSP
iProClass
ProtoMap
SCOP
TOPS
VAST
Bioinformatics Servers
@TOME
BLAST @ NCBI
BLAST @ PIR
FASTA @ PIR
Peptide Match @ PIR
ClustalW @ BCM
ClustalW @ EMBL - EBI
ClustalW @ PIR
Bioinformatics Tools
Cn3D
MolMol
Bioinformatics Links
Bioinformatics Links Directory
|
SDAP - All Allergens
Full FASTA alignment
Sequence name: Query sequence: GGIVIYWGQNGNEGTLTQTCSTRKYSYVNIAFLNKFGNGQTPQINLAGHC NPAAGGCTIVSNGIRSCQIQGIKVMLSLGGGIGSYTLASQADAKNVADYL WSNFLGGKSSSRPLGDAVLDGIDFDIEHGSTLYWDDLARYLSAYSKQGKK VYLTAAPQCPFPDRYLGTALNTGLLTMYGFNSITIHHASIAQVTLTTSLT RGIDGPHL
Alignment made with FASTA 3.45 As explained in the FASTA manual, the bit score is equivalent to the bit score reported by BLAST. A 1 bit increase in score corresponds to a 2-fold reduction in expectation, and a 10-bit increase implies 1000-fold lower expectation. Sequences with E values < 0.01 are almost always homologous.
Alignment 1 Sequence 1: Sequence 2: Allergen Hev b 14.0101, Sequence: ADR82196 Sequence identity: 100.00 (208/208) Sequence 1 GGIVIYWGQNGNEGTLTQTCSTRKYSYVNIAFLNKFGNGQTPQINLAGHC GGIVIYWGQNGNEGTLTQTCSTRKYSYVNIAFLNKFGNGQTPQINLAGHC Sequence 2 GGIVIYWGQNGNEGTLTQTCSTRKYSYVNIAFLNKFGNGQTPQINLAGHC
Sequence 1 NPAAGGCTIVSNGIRSCQIQGIKVMLSLGGGIGSYTLASQADAKNVADYL NPAAGGCTIVSNGIRSCQIQGIKVMLSLGGGIGSYTLASQADAKNVADYL Sequence 2 NPAAGGCTIVSNGIRSCQIQGIKVMLSLGGGIGSYTLASQADAKNVADYL
Sequence 1 WSNFLGGKSSSRPLGDAVLDGIDFDIEHGSTLYWDDLARYLSAYSKQGKK WSNFLGGKSSSRPLGDAVLDGIDFDIEHGSTLYWDDLARYLSAYSKQGKK Sequence 2 WSNFLGGKSSSRPLGDAVLDGIDFDIEHGSTLYWDDLARYLSAYSKQGKK
Sequence 1 VYLTAAPQCPFPDRYLGTALNTGLLTMYGFNSITIHHASIAQVTLTTSLT VYLTAAPQCPFPDRYLGTALNTGLLTMYGFNSITIHHASIAQVTLTTSLT Sequence 2 VYLTAAPQCPFPDRYLGTALNTGLLTMYGFNSITIHHASIAQVTLTTSLT
Sequence 1 RGIDGPHL RGIDGPHL Sequence 2 RGIDGPHL
Alignment 2 Sequence 1: Sequence 2: Allergen Pun g 14.0101, Sequence: G1UH28 Sequence identity: 58.65 (122/208) Sequence 1 --------------------------GGIVIYWGQNGNEGTLTQTCSTRK --------------------------G-I-IYWGQNG-EGTL--TC-T-- Sequence 2 MAKTLPFSRALLLSLSILLVARAISAGDIAIYWGQNGGEGTLASTCDTGR
Sequence 1 YSYVNIAFLNKFGNGQTPQINLAGHCNPAAGGCTIVSNGIRSCQIQGIKV Y-YV---F---FGN---P--NLAGHC-PAAG-CT--S--IRSCQ---IKV Sequence 2 YAYVIVSFVTTFGNFRAPVVNLAGHCDPAAGTCTGLSDEIRSCQGKDIKV
Sequence 1 MLSLGGGIGSYTLASQADAKNVADYLWSNFLGGKSSSRPLGDAVLDGIDF --S-GGG-G-Y-L-S-ADA-N-ADYLW-NFLGG-SSSRPLGDAVLDGIDF Sequence 2 LMSIGGGAGDYSLVSEADADNFADYLWNNFLGGQSSSRPLGDAVLDGIDF
Sequence 1 DIEHGSTLYWDDLARYLSAYSKQGKKVYLTAAPQCPFPDRYLGTALNTGL DIE-G-T---D-LAR-LS--S-Q--KVYLTAAPQCP-PD--L--ALNTGL Sequence 2 DIELGTTTFYDTLARALSSRSTQAAKVYLTAAPQCPHPDSHLDAALNTGL
Sequence 1 LTMYGFNSITI--HHASIAQVTLTTSLTRGIDGPHL-------------- -----F----I-------AQ-------T--I------------------- Sequence 2 -----FDNVWIQFYNNPLAQCQYSSGNTNDILSSWNTWTSSTTAGKIFLG
Sequence 1 -------------------------------------------------- -------------------------------------------------- Sequence 2 LPAAPEAAGSGYIPPDVLTGQILPQIKTSAKYGGVMLYSKFYDTTYSTTI
Sequence 1 ---- ---- Sequence 2 KDQV
Alignment 3 Sequence 1: Sequence 2: Allergen Ziz m 1.0101, Sequence: Q2VST0 Sequence identity: 41.83 (87/208) Sequence 1 -------------------------GGIVIYWGQ--NGNEGTLTQTCSTR -------------------------GGI--YWGQ-----EG-L---C--- Sequence 2 MVPQAKLVVASLILTSALIQTSEAVGGIATYWGQYTETEEGSLAEACASN
Sequence 1 KYSYVNIAFLNKFGNGQTPQINLAGHCNPAAGGCTIVSNGIRSCQIQGIK -YSY-NIA-LN-FG-G-----N--GHC------CT-----I--CQ-QG-K Sequence 2 LYSYINIAYLNIFGEGRYLSLNISGHCSD----CTFLGEEIKACQSQGVK
Sequence 1 VMLSLGGGIGSYTLASQADAKNVADYLWSNFLGGKSSS---RPL-GDAVL --LSLGG--G-Y-L----DA--VA--LWS-FLGG--S-----PL-GD--L Sequence 2 IFLSLGGPYGDYHLTTDGDADRVAEQLWSSFLGGSKSTGVYQPLLGDVEL
Sequence 1 DGIDFDIEHGSTLYWDDLARYLSAYSK-QGKKVYLTAAPQCPF---PDRY DGID-DI--G-----D-LAR-L----K------YL-AAP-C------D-Y Sequence 2 DGIDLDIQIGPPEEYDVLARNLKDLTKDRTRPFYLSAAPKCSAYNDSDAY
Sequence 1 LGTALNTGLLTMYGFNSITIHHASIAQVTLTTSLTRGIDGPHL------- L-TA--TGL-------------------T--------------------- Sequence 2 LWTAVETGLFDFVWVKFYNDTSCQYNNDTAAGLDAFYRSWYDWTVSLAEG
Sequence 1 -------------------------------------------------- -------------------------------------------------- Sequence 2 NKLLIGIPASNETDNSPLGGYIPSDVLNDQIVSVIMTSSKFGGVNVWNRY
Sequence 1 ---------------------------------- ---------------------------------- Sequence 2 YDLKTNYSSSIILEYVNSGTKYLPLRTKFMYQNA
Alignment 4 Sequence 1: Sequence 2: Allergen Cof a 1.0101, Sequence: ADH10372 Sequence identity: 36.06 (75/208) Sequence 1 GGIVIYWGQNGNEGTLTQTCSTRKY-SYVNIAFLNKFGNGQTPQINLAGH -GIV-YWG----E---------------VNIAFL--FG-G--P--N---H Sequence 2 AGIVRYWGRGHDEPSSLAEFGRQEFATDVNIAFLEDFGGGRMPELNIS-H
Sequence 1 CNPAAGGCTIVSNGIRSCQIQGIKVMLSLGGGIGSYTLASQADAKNVADY --P-A---------I--CQ----KV--S--G------L-S--DA--VA-Y Sequence 2 PLPSA-------SDIEYCQKHQTKVFISIAG---QPSLSSVEDAEEVAAY
Sequence 1 LWSNFLGGKSSSRPLGDAVLDGIDFDIEHGSTLYWDDLARYLSAYSKQGK -W---LGGKSS-RP-G-AVLDG----I--G-T-Y-DDLAR-L--YS---- Sequence 2 VWNTYLGGKSSDRPFGKAVLDGVELHIHSGNTTYLDDLARALKGYSN---
Sequence 1 KVYLTAAPQCPFPDRYLGTALNTGLLTMYGFNSITIHHASIAQVTLTTSL -V----A--CP-PD--L-T---TG----------------------T--L Sequence 2 -VISAVAAECPIPDPALDTTIRTGVVDQVRVEFFDNPSCQFTPPKDTSLL
Sequence 1 TRGIDGPHL----------------------------------------- ----D--------------------------------------------- Sequence 2 FPSWDNWSDYPGVHKLYLGIPISPTIAPEGGYIPPNELVYHVLPYLKKSP
Sequence 1 ---------------------------- ---------------------------- Sequence 2 VYGGIMVFPYLHHEVNFQSMLRSYARAA
|