SDAP Home Page
SDAP Overview
SDAP All
SDAP Food
Use SDAP All
Search SDAP All
List SDAP All
SDAP Food
SDAP Tools
FAO/WHO Allergenicity Test
FASTA Search in SDAP
Peptide Match
Peptide Similarity
Peptide-Protein PD Index
Aller_ML, Allergen Markup Language
List SDAP
About SDAP
General Information
Manual
FAQ
Publications
Who Are We
Advisory Board
Allergy Links
Our Software Tools
MPACK
FANTOM
GETAREA
NOAH/DIAMOD
MASIA
PCPMer
InterProSurf
EpiSearch
Protein Databases
PDB
MMDB - Entrez
SWISS-PROT
NCBI - Entrez
PIR
Protein Classification
CATH
CE
FSSP
iProClass
ProtoMap
SCOP
TOPS
VAST
Bioinformatics Servers
@TOME
BLAST @ NCBI
BLAST @ PIR
FASTA @ PIR
Peptide Match @ PIR
ClustalW @ BCM
ClustalW @ EMBL - EBI
ClustalW @ PIR
Bioinformatics Tools
Cn3D
MolMol
Bioinformatics Links
Bioinformatics Links Directory
|
SDAP - All Allergens
Full FASTA alignment
Sequence name: Query sequence: MRLTLFAFVLAVCALASNATLAPRTDDVLAEQLYMSVVIGEYETAIAKCS EYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKEIVKSYFPIQF RVIFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTP VLENNRVYFKIMSTEDKQYLKLDNTKGSSDDRIIYGDSTADTFKHHWYLE PSMYESDVMFFVYNREYNSVMTLDEDMAANEDREALGHSGEVSGYPQLFA WYIVPY
Alignment made with FASTA 3.45 As explained in the FASTA manual, the bit score is equivalent to the bit score reported by BLAST. A 1 bit increase in score corresponds to a 2-fold reduction in expectation, and a 10-bit increase implies 1000-fold lower expectation. Sequences with E values < 0.01 are almost always homologous.
Alignment 1 Sequence 1: Sequence 2: Allergen Bomb m 4.0101, Sequence: NP_001037486 Sequence identity: 100.00 (256/256) Sequence 1 MRLTLFAFVLAVCALASNATLAPRTDDVLAEQLYMSVVIGEYETAIAKCS MRLTLFAFVLAVCALASNATLAPRTDDVLAEQLYMSVVIGEYETAIAKCS Sequence 2 MRLTLFAFVLAVCALASNATLAPRTDDVLAEQLYMSVVIGEYETAIAKCS
Sequence 1 EYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKEIVKSYFPIQF EYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKEIVKSYFPIQF Sequence 2 EYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKEIVKSYFPIQF
Sequence 1 RVIFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTP RVIFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTP Sequence 2 RVIFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTP
Sequence 1 VLENNRVYFKIMSTEDKQYLKLDNTKGSSDDRIIYGDSTADTFKHHWYLE VLENNRVYFKIMSTEDKQYLKLDNTKGSSDDRIIYGDSTADTFKHHWYLE Sequence 2 VLENNRVYFKIMSTEDKQYLKLDNTKGSSDDRIIYGDSTADTFKHHWYLE
Sequence 1 PSMYESDVMFFVYNREYNSVMTLDEDMAANEDREALGHSGEVSGYPQLFA PSMYESDVMFFVYNREYNSVMTLDEDMAANEDREALGHSGEVSGYPQLFA Sequence 2 PSMYESDVMFFVYNREYNSVMTLDEDMAANEDREALGHSGEVSGYPQLFA
Sequence 1 WYIVPY WYIVPY Sequence 2 WYIVPY
Alignment 2 Sequence 1: Sequence 2: Allergen Bomb m 5.0101, Sequence: 4PC4_A Sequence identity: 39.84 (102/256) Sequence 1 MRLTLFAFVLAVCALASNATLAPRTDDVLAEQLYMSVVIGEYETAIAKCS ---------------------A------L-E-LY-S---G-Y--A----- Sequence 2 ---------------GVVELSADTSNQDLEEKLYNSILTGDYDSAVRQSL
Sequence 1 EYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKEIVKSYFPIQF EY----KG--I---V--LI----RNTM---Y-LW---G-EIV--YFP--F Sequence 2 EYESQGKGSIIQNVVNNLIIDKRRNTMEYCYKLWVGNGQEIVRKYFPLNF
Sequence 1 RVIFTEQTVKLINKRDHHALKLIDQQN--HNKIAFGDSKDKTSKKVSWKF R-I-----VK-I------ALKL----N-----IA-GD--DK----VSWKF Sequence 2 RLIMAGNYVKIIYRNYNLALKLGSTTNPSNERIAYGDGVDKHTELVSWKF
Sequence 1 TPVLENNRVYFKIMSTEDKQYLKLDNT--KGSSDDRIIYGDSTADTFKHH ----ENNRVYFKI--T---QYLK---T-----S-DR--YG---AD----- Sequence 2 ITLWENNRVYFKIHNTKYNQYLKMSTTTCNCNSRDRVVYGGNSADSTREQ
Sequence 1 WYLEPSMYESDVMFFVYNREYNSVMTLDEDMAANEDREALGHSGEVSGYP W---P--YE-DV-FF-YNR--N----L-----A--DR-A-GH-GEV-G-P Sequence 2 WFFQPAKYENDVLFFIYNRQFNDALELGTIVNASGDRKAVGHDGEVAGLP
Sequence 1 QLFAWYIVPY ----W-I-P- Sequence 2 DIYSWFITPF
|