
SDAP Home Page
SDAP Overview
SDAP All
SDAP Food
Use SDAP All
Search SDAP All
List SDAP All
SDAP Food
SDAP Tools
FAO/WHO Allergenicity Test
FASTA Search in SDAP
Peptide Match
Peptide Similarity
Peptide-Protein PD Index
Aller_ML, Allergen Markup Language
List SDAP
About SDAP
General Information
Manual
FAQ
Publications
Who Are We
Advisory Board
Allergy Links
Our Software Tools
MPACK
FANTOM
GETAREA
NOAH/DIAMOD
MASIA
PCPMer
InterProSurf
EpiSearch
Protein Databases
PDB
MMDB - Entrez
SWISS-PROT
NCBI - Entrez
PIR
Protein Classification
CATH
CE
FSSP
iProClass
ProtoMap
SCOP
TOPS
VAST
Bioinformatics Servers
@TOME
BLAST @ NCBI
BLAST @ PIR
FASTA @ PIR
Peptide Match @ PIR
ClustalW @ BCM
ClustalW @ EMBL - EBI
ClustalW @ PIR
Bioinformatics Tools
Cn3D
MolMol
Bioinformatics Links
Bioinformatics Links Directory
|
SDAP - All Allergens
Full FASTA alignment
Sequence name: Query sequence: GSSFCDSKCAVRCSKAGVQD
Alignment made with FASTA 3.45 As explained in the FASTA manual, the bit score is equivalent to the bit score reported by BLAST. A 1 bit increase in score corresponds to a 2-fold reduction in expectation, and a 10-bit increase implies 1000-fold lower expectation. Sequences with E values < 0.01 are almost always homologous.
Alignment 1 Sequence 1: Sequence 2: Allergen Pun g 7.01, Sequence: C0HKC0 Sequence identity: 100.00 (20/20) Sequence 1 GSSFCDSKCAVRCSKAGVQD GSSFCDSKCAVRCSKAGVQD Sequence 2 GSSFCDSKCAVRCSKAGVQD
Alignment 2 Sequence 1: Sequence 2: Allergen Pru p 7.0101, Sequence: P86888 Sequence identity: 85.00 (17/20) Sequence 1 GSSFCDSKCAVRCSKAGVQD------------------------------ GSSFCDSKC-VRCSKAG-Q------------------------------- Sequence 2 GSSFCDSKCGVRCSKAGYQERCLKYCGICCEKCHCVPSGTYGNKDECPCY
Sequence 1 ------------- ------------- Sequence 2 RDLKNSKGNPKCP
Alignment 3 Sequence 1: Sequence 2: Allergen Pru m 7.0101, Sequence: XP_016648029 Sequence identity: 85.00 (17/20) Sequence 1 -------------------------GSSFCDSKCAVRCSKAGVQD----- -------------------------GSSFCDSKC-VRCSKAG-Q------ Sequence 2 MKLGFATFLLVCLLLSSSVFEVTMAGSSFCDSKCGVRCSKAGYQERCLKY
Sequence 1 -------------------------------------- -------------------------------------- Sequence 2 CGICCEKCHCVPSGTYGNKDECPCYRDLKNSKGNPKCP
Alignment 4 Sequence 1: Sequence 2: Allergen Pru av 7.01, Sequence: XP_021820299 Sequence identity: 80.00 (16/20) Sequence 1 -------------------------GSSFCDSKCAVRCSKAGVQD----- -------------------------GSSFCDSKC-VRCSKAG-------- Sequence 2 MKLGFATFLLVCLLLSSSVFEVTMAGSSFCDSKCGVRCSKAGYKERCLKY
Sequence 1 -------------------------------------- -------------------------------------- Sequence 2 CGICCEKCNCVPSGTYGNKDECPCYRDLKNSKGNPKCP
|