SDAP Home Page
SDAP Overview
SDAP All
SDAP Food
Use SDAP All
Search SDAP All
List SDAP All
SDAP Food
SDAP Tools
FAO/WHO Allergenicity Test
FASTA Search in SDAP
Peptide Match
Peptide Similarity
Peptide-Protein PD Index
Aller_ML, Allergen Markup Language
List SDAP
About SDAP
General Information
Manual
FAQ
Publications
Who Are We
Advisory Board
Allergy Links
Our Software Tools
MPACK
FANTOM
GETAREA
NOAH/DIAMOD
MASIA
PCPMer
InterProSurf
EpiSearch
Protein Databases
PDB
MMDB - Entrez
SWISS-PROT
NCBI - Entrez
PIR
Protein Classification
CATH
CE
FSSP
iProClass
ProtoMap
SCOP
TOPS
VAST
Bioinformatics Servers
@TOME
BLAST @ NCBI
BLAST @ PIR
FASTA @ PIR
Peptide Match @ PIR
ClustalW @ BCM
ClustalW @ EMBL - EBI
ClustalW @ PIR
Bioinformatics Tools
Cn3D
MolMol
Bioinformatics Links
Bioinformatics Links Directory
|
SDAP - All Allergens
Full FASTA alignment
Sequence name: Query sequence: PAGPFRIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTLEGEFDFED DMENPQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLE QQGQQGPHLQHVISRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS
Alignment made with FASTA 3.45 As explained in the FASTA manual, the bit score is equivalent to the bit score reported by BLAST. A 1 bit increase in score corresponds to a 2-fold reduction in expectation, and a 10-bit increase implies 1000-fold lower expectation. Sequences with E values < 0.01 are almost always homologous.
Alignment 1 Sequence 1: Sequence 2: Allergen Sin a 1, Sequence: CAA62910 Sequence identity: 100.00 (145/145) Sequence 1 PAGPFRIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTLEGEFDFED PAGPFRIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTLEGEFDFED Sequence 2 PAGPFRIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTLEGEFDFED
Sequence 1 DMENPQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLE DMENPQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLE Sequence 2 DMENPQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLE
Sequence 1 QQGQQGPHLQHVISRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS QQGQQGPHLQHVISRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS Sequence 2 QQGQQGPHLQHVISRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS
Alignment 2 Sequence 1: Sequence 2: Allergen Sin a 1, Sequence: CAA62912 Sequence identity: 98.62 (143/145) Sequence 1 PAGPFRIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTLEGEFDFED PAGPFRIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTL--EFDFED Sequence 2 PAGPFRIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTLDDEFDFED
Sequence 1 DMENPQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLE DMENPQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLE Sequence 2 DMENPQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLE
Sequence 1 QQGQQGPHLQHVISRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS QQGQQGPHLQHVISRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS Sequence 2 QQGQQGPHLQHVISRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS
Alignment 3 Sequence 1: Sequence 2: Allergen Sin a 1, Sequence: AAB25214 Sequence identity: 97.24 (141/145) Sequence 1 PAGPFRIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTLEGEFDFED PAGPFRIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTL--EFDFED Sequence 2 PAGPFRIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTLDDEFDFED
Sequence 1 DMENPQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLE DMENPQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQL- Sequence 2 DMENPQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLG
Sequence 1 QQGQQGPHLQHVISRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS QQGQQGPHLQHVISRIYQTATHLPKVCNI-QVSVCPFKKTMPGPS Sequence 2 QQGQQGPHLQHVISRIYQTATHLPKVCNIRQVSVCPFKKTMPGPS
Alignment 4 Sequence 1: Sequence 2: Allergen Sin a 1, Sequence: CAA62909 Sequence identity: 95.86 (139/145) Sequence 1 PAGPFRIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTLEGEFDFED PAGPF-IPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTL--EFDFED Sequence 2 PAGPFGIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTLDDEFDFED
Sequence 1 DMENPQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLE DMENPQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLE Sequence 2 DMENPQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLE
Sequence 1 QQGQQGPHLQHVISRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS QQGQQGPHLQHVISRIYQTATHLP-VCNI-QVSVCPF-KTMPGPS Sequence 2 QQGQQGPHLQHVISRIYQTATHLPRVCNIRQVSVCPFQKTMPGPS
Alignment 5 Sequence 1: Sequence 2: Allergen Sin a 1, Sequence: CAA62911 Sequence identity: 95.86 (139/145) Sequence 1 PAGPFRIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTLEGEFDFED PAGPF-IPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTL--EFDFED Sequence 2 PAGPFGIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTLDDEFDFED
Sequence 1 DMENPQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLE DMENPQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQL- Sequence 2 DMENPQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLG
Sequence 1 QQGQQGPHLQHVISRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS QQGQQGP--QHVISRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS Sequence 2 QQGQQGPQVQHVISRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS
Alignment 6 Sequence 1: Sequence 2: Allergen Sin a 1, Sequence: CAA62908 Sequence identity: 95.17 (138/145) Sequence 1 PAGPFRIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTLEGEFDFED PAGPF-IPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTL--EFDFED Sequence 2 PAGPFGIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTLDDEFDFED
Sequence 1 DMENPQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLE DMENPQGPQQ-PPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQL- Sequence 2 DMENPQGPQQKPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLG
Sequence 1 QQGQQGPHLQHVISRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS QQGQQGP--QHVISRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS Sequence 2 QQGQQGPQVQHVISRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS
Alignment 7 Sequence 1: Sequence 2: Allergen Bra r 1, Sequence: Q42473 Sequence identity: 86.21 (125/145) Sequence 1 -------------------------------------PAGPFRIPKCRKE -------------------------------------PAGPFRIPKCRKE Sequence 2 MANKLFLVSATLALFFLLTNASVYRTGSEFDEHDATNPAGPFRIPKCRKE
Sequence 1 FQQAQHLRACQQWLHKQAMQSGSGPSWTLEGEFDFEDDMENPQGPQQRPP FQQAQHL-ACQQWLHKQAMQSGSGPSWTL-GEFDFE-DMEN-QGPQQ-PP Sequence 2 FQQAQHLKACQQWLHKQAMQSGSGPSWTLDGEFDFEEDMENTQGPQQEPP
Sequence 1 LLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLEQQGQQGPHLQHVI LLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQ--QQ-------Q-VI Sequence 2 LLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQGQQQ-----QMQQVI
Sequence 1 SRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS- SRIYQT-THLP-VCNI-QVS-CPF-KTMPGPS- Sequence 2 SRIYQTSTHLPRVCNIRQVSICPFQKTMPGPSY
Alignment 8 Sequence 1: Sequence 2: Allergen Sin a 1, Sequence: P15322 Sequence identity: 87.59 (127/145) Sequence 1 PAGPFRIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTLEGEFDFED PAGPFRIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPS----------- Sequence 2 PAGPFRIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPS-----------
Sequence 1 DMENPQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLE ----PQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLE Sequence 2 ----PQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLE
Sequence 1 QQGQQGPHLQHVISRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS QQGQQGPH---VISRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS Sequence 2 QQGQQGPH---VISRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS
Alignment 9 Sequence 1: Sequence 2: Allergen Bra j 1, Sequence: P80207 Sequence identity: 80.00 (116/145) Sequence 1 PAGPFRIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTLEGEFDFED -AGPFR-P-CRKEFQQAQHLRACQQWLHKQAMQSGSGP------------ Sequence 2 -AGPFRFPRCRKEFQQAQHLRACQQWLHKQAMQSGSGPQ-----------
Sequence 1 DMENPQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLE ----PQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQ-RQQ-- Sequence 2 ----PQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQIRQQGQ
Sequence 1 QQGQQGPHLQHVISRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS QQGQQG--LQH-ISRIYQTATHLP-VCNIP-VS-CPF-KTMPGPS Sequence 2 QQGQQGQQLQHEISRIYQTATHLPRVCNIPRVSICPFQKTMPGPS
Alignment 10 Sequence 1: Sequence 2: Allergen Bra n 1, Sequence: P80208 Sequence identity: 82.07 (119/145) Sequence 1 PAGPFRIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSWTLEGEFDFED -AGPFRIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGP------------ Sequence 2 SAGPFRIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGP------------
Sequence 1 DMENPQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLE -----QGPQQRPPLLQQCCNELHQEEPLCVCPTLKGAS-AVKQQVRQQ-- Sequence 2 -----QGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASRAVKQQVRQQ--
Sequence 1 QQGQQGPHLQHVISRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS -QGQQG--LQ-VISRIYQTATHLPKVCNIPQVSVCPF-KTMPGPS Sequence 2 -QGQQGQQLQQVISRIYQTATHLPKVCNIPQVSVCPFQKTMPGPS
|