
SDAP Home Page
SDAP Overview
SDAP All
SDAP Food
Use SDAP All
Search SDAP All
List SDAP All
SDAP Food
SDAP Tools
FAO/WHO Allergenicity Test
FASTA Search in SDAP
Peptide Match
Peptide Similarity
Peptide-Protein PD Index
Aller_ML, Allergen Markup Language
List SDAP
About SDAP
General Information
Manual
FAQ
Publications
Who Are We
Advisory Board
Allergy Links
Our Software Tools
MPACK
FANTOM
GETAREA
NOAH/DIAMOD
MASIA
PCPMer
InterProSurf
EpiSearch
Protein Databases
PDB
MMDB - Entrez
SWISS-PROT
NCBI - Entrez
PIR
Protein Classification
CATH
CE
FSSP
iProClass
ProtoMap
SCOP
TOPS
VAST
Bioinformatics Servers
@TOME
BLAST @ NCBI
BLAST @ PIR
FASTA @ PIR
Peptide Match @ PIR
ClustalW @ BCM
ClustalW @ EMBL - EBI
ClustalW @ PIR
Bioinformatics Tools
Cn3D
MolMol
Bioinformatics Links
Bioinformatics Links Directory
|
SDAP - All Allergens
Full FASTA alignment
Sequence name: Query sequence: MQSRIVVAVVVFCCIILMQTEAGMLGGSSDVDVNDPEIKELAGKSIAKIS AMINDGKPHELVKVVSAKKQVVAGDKYTLEILVKDGDHQDLCTVTIWQKK WENFEEVKVLKCDHQ
Alignment made with FASTA 3.45 As explained in the FASTA manual, the bit score is equivalent to the bit score reported by BLAST. A 1 bit increase in score corresponds to a 2-fold reduction in expectation, and a 10-bit increase implies 1000-fold lower expectation. Sequences with E values < 0.01 are almost always homologous.
Alignment 1 Sequence 1: Sequence 2: Allergen Ani s 4.0101, Sequence: AM279414 Sequence identity: 100.00 (115/115) Sequence 1 MQSRIVVAVVVFCCIILMQTEAGMLGGSSDVDVNDPEIKELAGKSIAKIS MQSRIVVAVVVFCCIILMQTEAGMLGGSSDVDVNDPEIKELAGKSIAKIS Sequence 2 MQSRIVVAVVVFCCIILMQTEAGMLGGSSDVDVNDPEIKELAGKSIAKIS
Sequence 1 AMINDGKPHELVKVVSAKKQVVAGDKYTLEILVKDGDHQDLCTVTIWQKK AMINDGKPHELVKVVSAKKQVVAGDKYTLEILVKDGDHQDLCTVTIWQKK Sequence 2 AMINDGKPHELVKVVSAKKQVVAGDKYTLEILVKDGDHQDLCTVTIWQKK
Sequence 1 WENFEEVKVLKCDHQ WENFEEVKVLKCDHQ Sequence 2 WENFEEVKVLKCDHQ
Alignment 2 Sequence 1: Sequence 2: Allergen Act d 4.0101, Sequence: AAR92223 Sequence identity: 21.74 (25/115) Sequence 1 ----MQSRIVVAVVVFCCIILMQTEAGMLGGSSDVD-VNDPEIKELAGKS ------S----------------------GG-------N--E----A--- Sequence 2 MVPKPLSLLLFLLLALSAAVVGGRKLVAAGGWRPIESLNSAEVQDVAQFA
Sequence 1 IAKISAMINDGKPHELVKVVSAKKQVVAGDKYTLEILVKDGDHQDLCTVT --------ND--------VV----QVVAG--Y-L-I--KDG--------- Sequence 2 VSEHNKQANDELQYQ--SVVRGYTQVVAGTNYRLVIAAKDGAVVGNYEAV
Sequence 1 IWQKKWENFEEVKVLKCDHQ -W-K-W--F----------- Sequence 2 VWDKPWMHFRNLTSFRKV--
|