The University of Texas Medical Branch
Department of Biochemistry and Molecular Biology Sealy Center for Structural Biology Computational Biology

SDAP Home Page
SDAP Overview
SDAP All
SDAP Food

Use SDAP All
Search SDAP All
List SDAP All
SDAP Food

SDAP Tools
FAO/WHO Allergenicity Test
FASTA Search in SDAP
Peptide Match
Peptide Similarity
Peptide-Protein PD Index
Aller_ML, Allergen Markup Language
List SDAP

About SDAP
General Information
Manual
FAQ
Publications
Who Are We
Advisory Board

Allergy Links

Our Software Tools
MPACK
FANTOM
GETAREA
NOAH/DIAMOD
MASIA
PCPMer
InterProSurf
EpiSearch

Protein Databases
PDB
MMDB - Entrez
SWISS-PROT
NCBI - Entrez
PIR

Protein Classification
CATH
CE
FSSP
iProClass
ProtoMap
SCOP
TOPS
VAST

Bioinformatics Servers
@TOME
BLAST @ NCBI
BLAST @ PIR
FASTA @ PIR
Peptide Match @ PIR
ClustalW @ BCM
ClustalW @ EMBL - EBI
ClustalW @ PIR

Bioinformatics Tools
Cn3D
MolMol

Bioinformatics Links
Bioinformatics Links Directory

SDAP - All Allergens
Go to: SDAP All allergens       Go to: SDAP Food allergens
Send a comment to Ovidiu Ivanciuc      Submit new allergen information to SDAP
Last Updated: February 25, 2013  
Alphabetical listing of allergens: A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
Access to SDAP is available free of charge for Academic and non-profit use.
Licenses for commercial use can be obtained by contacting W. Braun (webraun@utmb.edu).
Secure access to SDAP is available from https://fermi.utmb.edu/SDAP

Allergen Asp f 28

Sequence 91680606

Full FASTA alignment

Sequence name:
Query sequence:
MSHGKVIAVDNPIIYKALTSSGPVVVDFFATWCGPCRAVAPKVGELSEKY
SNVRFIQVDVDKVRSVAHEMNIRAMPTFVLYKDGQPLEKRVVGGNVRELE
EMIKSISA

NoAllergenSequence Link in
SwissProt/NCBI/PIR
View SequenceSequence
Length
bit scoreE score
1Asp f 28.0101AJ937744Go!108169.21.8e-44
2Asp f 29.0101AJ937745Go!11079.12.4e-17
3Cop c 2Q9UW02Go!10676.31.6e-16
4Zea m 25.0101Q4W1F7Go!12868.25.2e-14
5Tri a 25.0101Q9LDX4Go!12567.58.2e-14
6Plo i 2.0101CBW45298Go!10666.81.2e-13
7Mala s 13.0101CAI78451Go!10566.11.9e-13
8Fus c 2AAL79931Go!12161.84.1e-12
9Alt a 4CAA58999Go!43336.56.2e-04

Alignment made with FASTA 3.45
As explained in the FASTA manual, the bit score is equivalent to the bit score reported by BLAST. A 1 bit increase in score corresponds to a 2-fold reduction in expectation, and a 10-bit increase implies 1000-fold lower expectation. Sequences with E values < 0.01 are almost always homologous.

Alignment 1
Sequence 1:
Sequence 2: Allergen Asp f 28.0101, Sequence: AJ937744
Sequence identity: 100.00 (108/108)
Sequence 1 MSHGKVIAVDNPIIYKALTSSGPVVVDFFATWCGPCRAVAPKVGELSEKY
           MSHGKVIAVDNPIIYKALTSSGPVVVDFFATWCGPCRAVAPKVGELSEKY
Sequence 2 MSHGKVIAVDNPIIYKALTSSGPVVVDFFATWCGPCRAVAPKVGELSEKY

Sequence 1 SNVRFIQVDVDKVRSVAHEMNIRAMPTFVLYKDGQPLEKRVVGGNVRELE
           SNVRFIQVDVDKVRSVAHEMNIRAMPTFVLYKDGQPLEKRVVGGNVRELE
Sequence 2 SNVRFIQVDVDKVRSVAHEMNIRAMPTFVLYKDGQPLEKRVVGGNVRELE

Sequence 1 EMIKSISA
           EMIKSISA
Sequence 2 EMIKSISA



Alignment 2
Sequence 1:
Sequence 2: Allergen Asp f 29.0101, Sequence: AJ937745
Sequence identity: 46.30 (50/108)
Sequence 1 MSHGKVIAVDNPIIY-KALTSSGPVVVDFFATWCGPCRAVAPKVGEL--S
           MSH------D------K----SGPV-VD--ATWCGPC-A--P----L--S
Sequence 2 MSHNVEKITDAKVFKEKVQEGSGPVIVDCSATWCGPCKAISPVFQRLSTS

Sequence 1 EKYSNVRFIQVDVDKVRSVAHEMNIRAMPTFVLYKDGQPLEKRVVGGNVR
           E---N--F---DVD----VA-E---RAMPTF---KDGQ-----VVG-N--
Sequence 2 EEFKNAKFYEIDVDELSEVAAELGVRAMPTFMFFKDGQKVNE-VVGANPP

Sequence 1 ELEEMIKSISA
           -LE--IK---A
Sequence 2 ALEAAIKAHVA



Alignment 3
Sequence 1:
Sequence 2: Allergen Cop c 2, Sequence: Q9UW02
Sequence identity: 42.59 (46/108)
Sequence 1 MSHGKVIAVDNPIIYKALTSSGPVVV-DFFATWCGPCRAVAPKVGELSEK
           -----V----N------LT-SG-----DF-ATWCGPCR---P-----SEK
Sequence 2 ----MVQVISNLDEFNKLTNSGKIIIIDFWATWCGPCRVISPIFEKFSEK

Sequence 1 Y--SNVRFIQVDVDKVRSVAHEMNIRAMPTFVLYKDGQPLEKRVVGGNVR
           Y---N--F--VDVD-------E--IRAMPTF--YKDGQ------VG-N--
Sequence 2 YGANNIVFAKVDVDTASDISEEAKIRAMPTFQVYKDGQKIDE-LVGANPT

Sequence 1 ELEEMIKSISA
           -LE-------A
Sequence 2 ALESLVQKSLA



Alignment 4
Sequence 1:
Sequence 2: Allergen Zea m 25.0101, Sequence: Q4W1F7
Sequence identity: 39.81 (43/108)
Sequence 1 ---------------MSHGKVIAVDN----PI-IYKALTSSGPVVVDFFA
           ------------------G-VIA--------I-I--A------VV-DF-A
Sequence 2 MAASEAAAAAATPVAPTEGTVIAIHSLEEWSIQIEEANSAKKLVVIDFTA

Sequence 1 TWCGPCRAVAPKVGELSEKYSNVRFIQVDVDKVRSVAHEMNIRAMPTFVL
           TWC-PCRA-AP-------K--NV-F--VDVD-----A------AMPTF--
Sequence 2 TWCPPCRAMAPIFADMAKKSPNVVFLKVDVDEMKTIAEQFSVEAMPTFLF

Sequence 1 YKDGQPLEKRVVGGNVRELEEMIKSISA-
           ---G-----RVVG----EL--------A-
Sequence 2 MREGD-VKDRVVGAAKEELARKLELHMAS



Alignment 5
Sequence 1:
Sequence 2: Allergen Tri a 25.0101, Sequence: Q9LDX4
Sequence identity: 35.19 (38/108)
Sequence 1 -----------------MSHGKVIAVDNPIIYKALTSSGPVVVDFFATWC
           ------------------------------I--A------VV-DF-A-WC
Sequence 2 MAASAATATAAAVGAGEVISVHSLEQWTMQIEEANAAKKLVVIDFTASWC

Sequence 1 GPCRAVAPKVGELSEKYSNVRFIQVDVDKVRSVAHEMNIRAMPTFVLYKD
           GPCR--AP----L--K-----F--VDVD---S-A------AMPTF---K-
Sequence 2 GPCRIMAPIFADLAKKFPAAVFLKVDVDELKSIAEQFSVEAMPTFLFMKE

Sequence 1 GQPLEKRVVGGNVRELEEMIKSISA-
           G-----RVVG----EL--------A-
Sequence 2 GD-VKDRVVGAIKEELTNKVGLHAAQ



Alignment 6
Sequence 1:
Sequence 2: Allergen Plo i 2.0101, Sequence: CBW45298
Sequence identity: 37.04 (40/108)
Sequence 1 MSHGKVIAVDNPIIYKALTSSGP--VVVDFFATWCGPCRAVAPKVGELS-
           ---------D-------LT--G---VV-DF-ATWCGPC----PK--E---
Sequence 2 ---MSIHIKDVEDLTARLTEAGDKLVVIDFMATWCGPCKIIGPKLDEIAA

Sequence 1 EKYSNVRFIQVDVDKVRSVAHEMNIRAMPTFVLYKDGQPLEKRVVGGNVR
           E---------VDVD-----A-E--I--MPTFV--K-G-P-E----G-NV-
Sequence 2 EMADSIVVVKVDVDECEDIATEYSINTMPTFVFVKNGKPVEQ-FSGANVE

Sequence 1 ELEEMIKSISA
           -L---I-----
Sequence 2 KLRSTILKLK-



Alignment 7
Sequence 1:
Sequence 2: Allergen Mala s 13.0101, Sequence: CAI78451
Sequence identity: 39.81 (43/108)
Sequence 1 MSHGKVIAVDNPIIYKALTSSGPVVV-DFFATWCGPCRAVAPKVGELSEK
           -----V---------K--T----VVV-DF-ATWCGPC----P-----S--
Sequence 2 -----VQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDT

Sequence 1 YSN--VRFIQVDVDKVRSVAHEMNIRAMPTFVLYKDGQPLEKRVVGGNVR
           -----V-F--VDVD-----A-E--IRAMPTFV--K-GQ-----VVG----
Sequence 2 PAGDKVGFYKVDVDEQSQIAQEVGIRAMPTFVFFKNGQKIDT-VVGADPS

Sequence 1 ELEEMIKSISA
           -L---I---SA
Sequence 2 KLQAAITQHSA



Alignment 8
Sequence 1:
Sequence 2: Allergen Fus c 2, Sequence: AAL79931
Sequence identity: 33.33 (36/108)
Sequence 1 MSHGKVIAVDNPIIYKALTSSGPVVVDFFATWCGPCRAVAPKVGELSEKY
           ----------N----K-L-S---VVVDFFA-WC-PC-A-AP----LS-K-
Sequence 2 ---MVHHITSNDELQKLLSSTTYVVVDFFADWCPPCKAIAPVYEQLSTKH

Sequence 1 SN---VRFIQVDVDKVRSVAHEMNIRAMPTFVLYKDGQPLEKRVVGGNVR
           S------F--V-VD-V---A----I-AMPTF---K-G-------------
Sequence 2 SVPDVLAFAKVNVDHVQDAAQQYGITAMPTFMFFKEGKQVAVNGQAVIKG

Sequence 1 ELEEMIKSISA-------------
           ------------------------
Sequence 2 ADPRTLGAAAEKLGGLAQKRVAGA



Alignment 9
Sequence 1:
Sequence 2: Allergen Alt a 4, Sequence: CAA58999
Sequence identity: 18.52 (20/108)
Sequence 1 --------------------------------------------------
           --------------------------------------------------
Sequence 2 MTKQALPAVSEVTKDTLEEFKTADKVVLVAYFAADDKASNETFTSVANGL

Sequence 1 --------------------------------------------------
           --------------------------------------------------
Sequence 2 RDNFLFGATNDAALAKAEGVKQPGLVCTSPSTTARTSSPRPSMRTYPRLR

Sequence 1 --------------------------------------------------
           --------------------------------------------------
Sequence 2 KVASTPLIGEVGPETYAGYMAAGIPLAYIFAETPEEREEFAKELKPLALK

Sequence 1 --------------------------------------------------
           --------------------------------------------------
Sequence 2 HKGEINFATIDAKSFGQHAGNLNLKVGTWPAFAIQRTEKNEKFPTNQEAK

Sequence 1 ------------------------------MSHGKVIAVDNPIIYKALTS
           --------------------------------------V-----------
Sequence 2 ITEKEIGKFVDDFLAGKIDPSIKSEPIPESNDGPVTVVVAHNYKDVVIDN

Sequence 1 SGPVVVDFFATWCGPCRAVAPKVGELSEKYSNVRFIQ-VDVDKVRSVAHE
           ---V-V-F-A-WCG-C-A-APK--EL---Y--------V---KV------
Sequence 2 DKDVLVEFYAPWCGHCKALAPKYEELGQLYASDELSKLVTIAKVDATLND

Sequence 1 MNIRAMPTFVLYKDGQPLEKRVVGGNVRELEEMIKSISA-----------
           --------------------------V-----------------------
Sequence 2 VPDEIQGFLPSSLFPLARRMPQSTTLVPHCRGSRPVHRRERLTQASASVG

Sequence 1 --------------------------------------------------
           --------------------------------------------------
Sequence 2 EAVEDATESAKASASSATDSAASAVSEGTETVKSGASVASDSASSAASEA

Sequence 1 ---------------------------------
           ---------------------------------
Sequence 2 TKSVKSAASEVTNSASSAASEASASASSVKDEL


SDAP Home Page | Search SDAP | SDAP Manual | SDAP FAQ | Contact  
UTMB | Search | Directories | Toolbox | News | Employment | Sitemap 
UT System | Reports to the State | Compact With Texans | Statewide Search
 
This site published by Ovidiu Ivanciuc
Copyright   2001-2013  The University of Texas Medical Branch. Please review our privacy policy and Internet guidelines.