SDAP Home Page
SDAP Overview
SDAP All
SDAP Food
Use SDAP All
Search SDAP All
List SDAP All
SDAP Food
SDAP Tools
FAO/WHO Allergenicity Test
FASTA Search in SDAP
Peptide Match
Peptide Similarity
Peptide-Protein PD Index
Aller_ML, Allergen Markup Language
List SDAP
About SDAP
General Information
Manual
FAQ
Publications
Who Are We
Advisory Board
Allergy Links
Our Software Tools
MPACK
FANTOM
GETAREA
NOAH/DIAMOD
MASIA
PCPMer
InterProSurf
EpiSearch
Protein Databases
PDB
MMDB - Entrez
SWISS-PROT
NCBI - Entrez
PIR
Protein Classification
CATH
CE
FSSP
iProClass
ProtoMap
SCOP
TOPS
VAST
Bioinformatics Servers
@TOME
BLAST @ NCBI
BLAST @ PIR
FASTA @ PIR
Peptide Match @ PIR
ClustalW @ BCM
ClustalW @ EMBL - EBI
ClustalW @ PIR
Bioinformatics Tools
Cn3D
MolMol
Bioinformatics Links
Bioinformatics Links Directory
|
SDAP - All Allergens
Full FASTA alignment
Sequence name: Query sequence: MSHNVEKITDAKVFKEKVQEGSGPVIVDCSATWCGPCKAISPVFQRLSTS EEFKNAKFYEIDVDELSEVAAELGVRAMPTFMFFKDGQKVNEVVGANPPA LEAAIKAHVA
Alignment made with FASTA 3.45 As explained in the FASTA manual, the bit score is equivalent to the bit score reported by BLAST. A 1 bit increase in score corresponds to a 2-fold reduction in expectation, and a 10-bit increase implies 1000-fold lower expectation. Sequences with E values < 0.01 are almost always homologous.
Alignment 1 Sequence 1: Sequence 2: Allergen Asp f 29.0101, Sequence: AJ937745 Sequence identity: 100.00 (110/110) Sequence 1 MSHNVEKITDAKVFKEKVQEGSGPVIVDCSATWCGPCKAISPVFQRLSTS MSHNVEKITDAKVFKEKVQEGSGPVIVDCSATWCGPCKAISPVFQRLSTS Sequence 2 MSHNVEKITDAKVFKEKVQEGSGPVIVDCSATWCGPCKAISPVFQRLSTS
Sequence 1 EEFKNAKFYEIDVDELSEVAAELGVRAMPTFMFFKDGQKVNEVVGANPPA EEFKNAKFYEIDVDELSEVAAELGVRAMPTFMFFKDGQKVNEVVGANPPA Sequence 2 EEFKNAKFYEIDVDELSEVAAELGVRAMPTFMFFKDGQKVNEVVGANPPA
Sequence 1 LEAAIKAHVA LEAAIKAHVA Sequence 2 LEAAIKAHVA
Alignment 2 Sequence 1: Sequence 2: Allergen Mala s 13.0101, Sequence: CAI78451 Sequence identity: 49.09 (54/110) Sequence 1 MSHNVEKITDAKVFKEKVQEGSGPVIVDCSATWCGPCKAISPVFQRLSTS ----V--I-----FK--V--G---V--D--ATWCGPCK-I-PVF---S-- Sequence 2 ----VQVISSYDQFKQ-VTGGDKVVVIDFWATWCGPCKMIGPVFEKISDT
Sequence 1 EEFKNAKFYEIDVDELSEVAAELGVRAMPTFMFFKDGQKVNEVVGANPPA -------FY--DVDE-S--A-E-G-RAMPTF-FFK-GQK---VVGA-P-- Sequence 2 PAGDKVGFYKVDVDEQSQIAQEVGIRAMPTFVFFKNGQKIDTVVGADPSK
Sequence 1 LEAAIKAHVA L-AAI--H-A Sequence 2 LQAAITQHSA
Alignment 3 Sequence 1: Sequence 2: Allergen Cop c 2, Sequence: Q9UW02 Sequence identity: 41.82 (46/110) Sequence 1 MSHNVEKITDAKVFKEKVQEGSGPVIVDCSATWCGPCKAISPVFQRLSTS ----V--I-----F------G----I-D--ATWCGPC--ISP-F---S-- Sequence 2 ---MVQVISNLDEFNKLTNSGK-IIIIDFWATWCGPCRVISPIFEKFSEK
Sequence 1 EEFKNAKFYEIDVDELSEVAAELGVRAMPTFMFFKDGQKVNEVVGANPPA ----N--F---DVD--S----E---RAMPTF---KDGQK--E-VGANP-A Sequence 2 YGANNIVFAKVDVDTASDISEEAKIRAMPTFQVYKDGQKIDELVGANPTA
Sequence 1 LEAAIKAHVA LE-------A Sequence 2 LESLVQKSLA
Alignment 4 Sequence 1: Sequence 2: Allergen Asp f 28.0101, Sequence: AJ937744 Sequence identity: 45.45 (50/110) Sequence 1 MSHNVEKITDAKVFKEKVQEGSGPVIVDCSATWCGPCKAISPVFQRLSTS MSH------D------K----SGPV-VD--ATWCGPC-A--P----LS-- Sequence 2 MSHGKVIAVDNPIIY-KALTSSGPVVVDFFATWCGPCRAVAPKVGELS--
Sequence 1 EEFKNAKFYEIDVDELSEVAAELGVRAMPTFMFFKDGQKVNE-VVGANPP E---N--F---DVD----VA-E---RAMPTF---KDGQ-----VVG-N-- Sequence 2 EKYSNVRFIQVDVDKVRSVAHEMNIRAMPTFVLYKDGQPLEKRVVGGNVR
Sequence 1 ALEAAIKAHVA -LE--IK---A Sequence 2 ELEEMIKSISA
Alignment 5 Sequence 1: Sequence 2: Allergen Tri a 25.0101, Sequence: Q9LDX4 Sequence identity: 36.36 (40/110) Sequence 1 -------------------MSHNVEKITDAKVFKEKVQEGSGPVIVDCSA ---------------------H--E--T------E--------V--D--A Sequence 2 MAASAATATAAAVGAGEVISVHSLEQWT-MQI--EEANAAKKLVVIDFTA
Sequence 1 TWCGPCKAISPVFQRLSTSEEFKNAKFYEIDVDELSEVAAELGVRAMPTF -WCGPC----P-F--L-----F--A-F---DVDEL---A----V-AMPTF Sequence 2 SWCGPCRIMAPIFADLA--KKFPAAVFLKVDVDELKSIAEQFSVEAMPTF
Sequence 1 MFFKDGQKVNEVVGANPPALEAAIKAHVA- -F-K-G-----VVGA----L------H-A- Sequence 2 LFMKEGDVKDRVVGAIKEELTNKVGLHAAQ
Alignment 6 Sequence 1: Sequence 2: Allergen Fus c 2, Sequence: AAL79931 Sequence identity: 36.36 (40/110) Sequence 1 MSHNVEKITDAKVFKEKVQEGSGPVIVDCSATWCGPCKAISPVFQRLSTS ----------------K-------V-VD--A-WC-PCKAI-PV---LST- Sequence 2 ----MVHHITSNDELQKLLSSTTYVVVDFFADWCPPCKAIAPVYEQLSTK
Sequence 1 EEFKNA-KFYEIDVDELSEVAAELGVRAMPTFMFFKDGQKV----NEVV- --------F----VD-----A---G--AMPTFMFFK-G--V------V-- Sequence 2 HSVPDVLAFAKVNVDHVQDAAQQYGITAMPTFMFFKEGKQVAVNGQAVIK
Sequence 1 GANPPALEAAIKAHVA--------- GA-P--L-AA--------------- Sequence 2 GADPRTLGAAAEKLGGLAQKRVAGA
Alignment 7 Sequence 1: Sequence 2: Allergen Zea m 25.0101, Sequence: Q4W1F7 Sequence identity: 30.91 (34/110) Sequence 1 -------------------MSHNVEKITDAKVFKEKVQEGSGPVIVDCSA ----------------------------------E--------V--D--A Sequence 2 MAASEAAAAAATPVAPTEGTVIAIHSLEEWSIQIEEANSAKKLVVIDFTA
Sequence 1 TWCGPCKAISPVFQRLSTSEEFKNAKFYEIDVDELSEVAAELGVRAMPTF TWC-PC-A--P-F----------N--F---DVDE----A----V-AMPTF Sequence 2 TWCPPCRAMAPIFADMA--KKSPNVVFLKVDVDEMKTIAEQFSVEAMPTF
Sequence 1 MFFKDGQKVNEVVGANPPALEAAIKAHVA- -F---G-----VVGA----L------H-A- Sequence 2 LFMREGDVKDRVVGAAKEELARKLELHMAS
Alignment 8 Sequence 1: Sequence 2: Allergen Plo i 2.0101, Sequence: CBW45298 Sequence identity: 32.73 (36/110) Sequence 1 MSHNVEKITDAKVFKEKVQEGSGPVIVDCSATWCGPCKAISPVFQRLSTS MS-------D----------G---V--D--ATWCGPCK-I-P-------- Sequence 2 MSIHIKDVED--LTARLTEAGDKLVVIDFMATWCGPCKIIGPKLDEIA-A
Sequence 1 EEFKNAKFYEIDVDELSEVAAELGVRAMPTFMFFKDGQKVNEVVGANPPA E----------DVDE----A-E-----MPTF-F-K-G--V----GAN--- Sequence 2 EMADSIVVVKVDVDECEDIATEYSINTMPTFVFVKNGKPVEQFSGANVEK
Sequence 1 LEAAIKAHVA L---I----- Sequence 2 LRSTILKLK-
Alignment 9 Sequence 1: Sequence 2: Allergen Alt a 4, Sequence: CAA58999 Sequence identity: 21.82 (24/110) Sequence 1 -------------------------------------------------- -------------------------------------------------- Sequence 2 MTKQALPAVSEVTKDTLEEFKTADKVVLVAYFAADDKASNETFTSVANGL
Sequence 1 -------------------------------------------------- -------------------------------------------------- Sequence 2 RDNFLFGATNDAALAKAEGVKQPGLVCTSPSTTARTSSPRPSMRTYPRLR
Sequence 1 -------------------------------------------------- -------------------------------------------------- Sequence 2 KVASTPLIGEVGPETYAGYMAAGIPLAYIFAETPEEREEFAKELKPLALK
Sequence 1 -------------------------------------------------- -------------------------------------------------- Sequence 2 HKGEINFATIDAKSFGQHAGNLNLKVGTWPAFAIQRTEKNEKFPTNQEAK
Sequence 1 -----------------------------MSHNVEKITDAKVFKEKVQEG ---------------------------------------A---K--V--- Sequence 2 ITEKEIGKFVDDFLAGKIDPSIKSEPIPESNDGPVTVVVAHNYKDVVIDN
Sequence 1 SGPVIVDCSATWCGPCKAISPVFQRLS---TSEEF-KNAKFYEIDVDELS ---V-V---A-WCG-CKA--P----L-----S-E--K-------D---L- Sequence 2 DKDVLVEFYAPWCGHCKALAPKYEELGQLYASDELSKLVTIAKVDAT-LN
Sequence 1 EVAAEL-GVRAMPTFMFFKDGQKVNEVVGANPPALEAAIKAHVA------ -V--E--G----P---F--------------------------------- Sequence 2 DVPDEIQGF--LPSSLFPLARRMPQSTTLVPHCRGSRPVHRRERLTQASA
Sequence 1 -------------------------------------------------- -------------------------------------------------- Sequence 2 SVGEAVEDATESAKASASSATDSAASAVSEGTETVKSGASVASDSASSAA
Sequence 1 ------------------------------------ ------------------------------------ Sequence 2 SEATKSVKSAASEVTNSASSAASEASASASSVKDEL
|