List of B-cell epitopes predicted by BepiPred method ( using a window size of 9 amino acids)

>Input Sequence

MSRLVLASFLLLAIFSMLVGGFGGFGGFGGLGGRGKCPSNEIFSRCDGRCQRFCPNVVPK
PLCIKICAPGCVCRLGYLRNKKKVCVPRSKCG

Start Position       End Position       Peptide       Score       PD Search in SDAP       Cross-Reactivity Prediction
75       83 LGYLRNKKK       7.485       Click here for PD Search       Click here for Cross-React search
74       82 RLGYLRNKK       7.331       Click here for PD Search       Click here for Cross-React search
76       84 GYLRNKKKV       6.737       Click here for PD Search       Click here for Cross-React search
77       85 YLRNKKKVC       3.649       Click here for PD Search       Click here for Cross-React search
33       41 GRGKCPSNE       3.343       Click here for PD Search       Click here for Cross-React search
80       88 NKKKVCVPR       3.241       Click here for PD Search       Click here for Cross-React search
79       87 RNKKKVCVP       3.241       Click here for PD Search       Click here for Cross-React search
82       90 KKVCVPRSK       2.701       Click here for PD Search       Click here for Cross-React search
81       89 KKKVCVPRS       2.701       Click here for PD Search       Click here for Cross-React search
34       42 RGKCPSNEI       2.368       Click here for PD Search       Click here for Cross-React search
44       52 SRCDGRCQR       2.333       Click here for PD Search       Click here for Cross-React search
73       81 CRLGYLRNK       1.965       Click here for PD Search       Click here for Cross-React search
32       40 GGRGKCPSN       1.911       Click here for PD Search       Click here for Cross-React search
78       86 LRNKKKVCV       1.729       Click here for PD Search       Click here for Cross-React search
45       53 RCDGRCQRF       1.508       Click here for PD Search       Click here for Cross-React search
39       47 SNEIFSRCD       1.5       Click here for PD Search       Click here for Cross-React search
36       44 KCPSNEIFS       1.418       Click here for PD Search       Click here for Cross-React search
38       46 PSNEIFSRC       1.389       Click here for PD Search       Click here for Cross-React search
37       45 CPSNEIFSR       1.389       Click here for PD Search       Click here for Cross-React search
41       49 EIFSRCDGR       1.349       Click here for PD Search       Click here for Cross-React search
47       55 DGRCQRFCP       1.19       Click here for PD Search       Click here for Cross-React search
48       56 GRCQRFCPN       1.146       Click here for PD Search       Click here for Cross-React search
40       48 NEIFSRCDG       1.107       Click here for PD Search       Click here for Cross-React search
52       60 RFCPNVVPK       1.085       Click here for PD Search       Click here for Cross-React search
35       43 GKCPSNEIF       1.047       Click here for PD Search       Click here for Cross-React search
43       51 FSRCDGRCQ       1.031       Click here for PD Search       Click here for Cross-React search
31       39 LGGRGKCPS       0.98       Click here for PD Search       Click here for Cross-React search
51       59 QRFCPNVVP       0.94       Click here for PD Search       Click here for Cross-React search
49       57 RCQRFCPNV       0.86       Click here for PD Search       Click here for Cross-React search
53       61 FCPNVVPKP       0.857       Click here for PD Search       Click here for Cross-React search
55       63 PNVVPKPLC       0.816       Click here for PD Search       Click here for Cross-React search
54       62 CPNVVPKPL       0.816       Click here for PD Search       Click here for Cross-React search
28       36 FGGLGGRGK       0.748       Click here for PD Search       Click here for Cross-React search
72       80 VCRLGYLRN       0.729       Click here for PD Search       Click here for Cross-React search
83       91 KVCVPRSKC       0.724       Click here for PD Search       Click here for Cross-React search
30       38 GLGGRGKCP       0.724       Click here for PD Search       Click here for Cross-React search

Source: Epitopes are predicted using BepiPred webserver implemented in IEDB Analysis Resource at http://tools.iedb.org/main/bcell/

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