The University of Texas Medical Branch
Department of Biochemistry and Molecular Biology Sealy Center for Structural Biology Computational Biology


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                SDAP 2.0 - Structural Database of Allergenic Proteins
Go to: SDAP All allergens       Go to: SDAP Food allergens
Send a comment to Werner Braun      Submit new allergen information to SDAP
  
Alphabetical listing of allergens: A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Access to SDAP is available free of charge for Academic and non-profit use.< Licenses for commercial use can be obtained by contacting W. Braun (webraun@utmb.edu). Secure access to SDAP is available from https://fermi.utmb.edu/SDAP


Input Sequence

DSKRDESDSFKRRMESLHDPTSTNLYMEGLPLSIDEPTLAALVSPHRISSSRFFQTRLSH
PPRIIAFVRLETRAGAEEIIERLHGRMVRGWNDTGSRISVRFADTAEQRELRRTERAAKE
GDLTSSKLTIAQAALLNLRGQELRQATIGTLPVIGERRNLNVTDASYNELPSNALQLPLS
QMSRPFEVDYTLAPGRAVPHITVPTSTNNPISQTYNRPLPRNVEPTLPLAMDQMRSNSTT
FRNAQAAYDSYLHQSVTLPNQQYASEDYSVRPGPANAHTGYTATEEFIMRAHVDARRRHG
PLDVTAPVRSRRDCDPEATAANISTGVR
Sequence Info Allergen Name Length Opt Bits Score E Value
CAB52131 Cop c 3 328 2138 493.8 3.9e-141
Please note: Alignment made with FASTA version 36.3.8. As explained in the FASTA manual, the bit score is equivalent to the bit score reported by BLAST. A 1 bit increase in score corresponds to a 2-fold reduction in expectation, and a 10-bit increase implies 1000-fold lower expectation. Sequences with E values < 0.01 are almost always homologous. All FASTA search sequence alignment are printed in Blast format where Query is input sequence, and Sbjct is sequence found in the database.

Sequence Alignment: 1. Allergen Name: Cop c 3 Sequence ID: CAB52131

 Score = 493.8 bits 2138,  Expect = 4e-141
 Identities = 328/328 100%, Positives = 328/328 100%, Gaps = 0/328 0%
Query  1    DSKRDESDSFKRRMESLHDPTSTNLYMEGLPLSIDEPTLAALVSPHRISSSRFFQTRLSH 60
            DSKRDESDSFKRRMESLHDPTSTNLYMEGLPLSIDEPTLAALVSPHRISSSRFFQTRLSH
Sbjct  1    DSKRDESDSFKRRMESLHDPTSTNLYMEGLPLSIDEPTLAALVSPHRISSSRFFQTRLSH 60
Query  61   PPRIIAFVRLETRAGAEEIIERLHGRMVRGWNDTGSRISVRFADTAEQRELRRTERAAKE 120
            PPRIIAFVRLETRAGAEEIIERLHGRMVRGWNDTGSRISVRFADTAEQRELRRTERAAKE
Sbjct  61   PPRIIAFVRLETRAGAEEIIERLHGRMVRGWNDTGSRISVRFADTAEQRELRRTERAAKE 120
Query  121  GDLTSSKLTIAQAALLNLRGQELRQATIGTLPVIGERRNLNVTDASYNELPSNALQLPLS 180
            GDLTSSKLTIAQAALLNLRGQELRQATIGTLPVIGERRNLNVTDASYNELPSNALQLPLS
Sbjct  121  GDLTSSKLTIAQAALLNLRGQELRQATIGTLPVIGERRNLNVTDASYNELPSNALQLPLS 180
Query  181  QMSRPFEVDYTLAPGRAVPHITVPTSTNNPISQTYNRPLPRNVEPTLPLAMDQMRSNSTT 240
            QMSRPFEVDYTLAPGRAVPHITVPTSTNNPISQTYNRPLPRNVEPTLPLAMDQMRSNSTT
Sbjct  181  QMSRPFEVDYTLAPGRAVPHITVPTSTNNPISQTYNRPLPRNVEPTLPLAMDQMRSNSTT 240
Query  241  FRNAQAAYDSYLHQSVTLPNQQYASEDYSVRPGPANAHTGYTATEEFIMRAHVDARRRHG 300
            FRNAQAAYDSYLHQSVTLPNQQYASEDYSVRPGPANAHTGYTATEEFIMRAHVDARRRHG
Sbjct  241  FRNAQAAYDSYLHQSVTLPNQQYASEDYSVRPGPANAHTGYTATEEFIMRAHVDARRRHG 300
Query  301  PLDVTAPVRSRRDCDPEATAANISTGVR 328
            PLDVTAPVRSRRDCDPEATAANISTGVR
Sbjct  301  PLDVTAPVRSRRDCDPEATAANISTGVR 328

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