The University of Texas Medical Branch
Department of Biochemistry and Molecular Biology Sealy Center for Structural Biology Computational Biology


SDAP Home Page
SDAP Overview

Search SDAP
SDAP All
SDAP Food

SDAP Tools
AllergenAI
FAO/WHO Allergenicity Test
FASTA Search in SDAP
Peptide Match
Peptide Similarity
Peptide-Protein PD Index
Aller_ML, Allergen Markup Language
List SDAP

About SDAP
General Information
Manual
FAQ
Publications
Who Are We
Advisory Board
New Allergen Submission form

Allergy Links

Our Software Tools
MPACK
FANTOM
GETAREA
InterProSurf
EpiSearch

Allergen Databases
WHO/IUIS Allergen Nomenclature database
FARRP Allergen Protein Database (University of Nebraska)
Allergen Database for Food Safety (ADFS)
COMPARE database
ALLFAM (Medical University of Vienna)
Allermatch (Wageninen University)
Allergome Database

Protein Databases
PDB
MMDB - Entrez
SWISS-PROT
NCBI - Entrez
PIR

Protein Classification
CATH
FSSP
iProClass
ProtoMap
SCOP
VAST

Bioinformatics Servers
BLAST @ NCBI
FASTA @ EMBL-EBI
Peptide Match @ PIR
ClustalW @ EMBL - EBI


                SDAP 2.0 - Structural Database of Allergenic Proteins
Go to: SDAP All allergens       Go to: SDAP Food allergens
Send a comment to Werner Braun      Submit new allergen information to SDAP
  
Alphabetical listing of allergens: A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Access to SDAP is available free of charge for Academic and non-profit use.< Licenses for commercial use can be obtained by contacting W. Braun (webraun@utmb.edu). Secure access to SDAP is available from https://fermi.utmb.edu/SDAP


Input Sequence

MSHNVEKITDAKVFKEKVQEGSGPVIVDCSATWCGPCKAISPVFQRLSTSEEFKNAKFYE
IDVDELSEVAAELGVRAMPTFMFFKDGQKVNEVVGANPPALEAAIKAHVA
Sequence Info Allergen Name Length Opt Bits Score E Value
AJ937745 Asp f 29.0101 110 726 193.8 9.1e-52
CAI78451 Mala s 13.0101 105 373 102.9 2e-24
Q9UW02 Cop c 2 106 327 91.0 7.5e-21
AJ937744 Asp f 28.0101 108 314 87.7 7.7e-20
Q9LDX4 Tri a 25.0101 125 265 75.1 5.6e-16
AAL79931 Fus c 2 121 253 72.0 4.6e-15
Q4W1F7 Zea m 25.0101 128 252 71.7 5.8e-15
CBW45298 Plo i 2.0101 106 232 66.6 1.7e-13
CAA58999 Alt a 4 433 112 35.8 0.0013
Please note: Alignment made with FASTA version 36.3.8. As explained in the FASTA manual, the bit score is equivalent to the bit score reported by BLAST. A 1 bit increase in score corresponds to a 2-fold reduction in expectation, and a 10-bit increase implies 1000-fold lower expectation. Sequences with E values < 0.01 are almost always homologous. All FASTA search sequence alignment are printed in Blast format where Query is input sequence, and Sbjct is sequence found in the database.

Sequence Alignment: 1. Allergen Name: Asp f 29.0101 Sequence ID: AJ937745

 Score = 193.8 bits 726,  Expect = 9e-52
 Identities = 110/110 100%, Positives = 110/110 100%, Gaps = 0/110 0%
Query  1    MSHNVEKITDAKVFKEKVQEGSGPVIVDCSATWCGPCKAISPVFQRLSTSEEFKNAKFYE 60
            MSHNVEKITDAKVFKEKVQEGSGPVIVDCSATWCGPCKAISPVFQRLSTSEEFKNAKFYE
Sbjct  1    MSHNVEKITDAKVFKEKVQEGSGPVIVDCSATWCGPCKAISPVFQRLSTSEEFKNAKFYE 60
Query  61   IDVDELSEVAAELGVRAMPTFMFFKDGQKVNEVVGANPPALEAAIKAHVA 110
            IDVDELSEVAAELGVRAMPTFMFFKDGQKVNEVVGANPPALEAAIKAHVA
Sbjct  61   IDVDELSEVAAELGVRAMPTFMFFKDGQKVNEVVGANPPALEAAIKAHVA 110

Sequence Alignment: 2. Allergen Name: Mala s 13.0101 Sequence ID: CAI78451

 Score = 102.9 bits 373,  Expect = 2e-24
 Identities = 54/105 51%, Positives = 75/105 71%, Gaps = 1/105 0%
Query  5    VEKITDAKVFKEKVQEGSGPVIVDCSATWCGPCKAISPVFQRLSTSEEFKNAKFYEIDVD 64
            V+ I+    FK+ V  G   V++D  ATWCGPCK I PVF+++S +       FY++DVD
Sbjct  1    VQVISSYDQFKQ-VTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVD 59
Query  65   ELSEVAAELGVRAMPTFMFFKDGQKVNEVVGANPPALEAAIKAHVA 110
            E S++A E+G+RAMPTF+FFK+GQK++ VVGA+P  L+AAI  H A
Sbjct  60   EQSQIAQEVGIRAMPTFVFFKNGQKIDTVVGADPSKLQAAITQHSA 105

Sequence Alignment: 3. Allergen Name: Cop c 2 Sequence ID: Q9UW02

 Score = 91.0 bits 327,  Expect = 7e-21
 Identities = 46/105 43%, Positives = 71/105 67%, Gaps = 1/105 0%
Query  5    VEKITDAKVFKEKVQEGSGPVIVDCSATWCGPCKAISPVFQRLSTSEEFKNAKFYEIDVD 64
            V+ I++   F +    G   +I+D  ATWCGPC+ ISP+F+++S      N  F ++DVD
Sbjct  2    VQVISNLDEFNKLTNSGK-IIIIDFWATWCGPCRVISPIFEKFSEKYGANNIVFAKVDVD 60
Query  65   ELSEVAAELGVRAMPTFMFFKDGQKVNEVVGANPPALEAAIKAHVA 110
              S+++ E  +RAMPTF  +KDGQK++E+VGANP ALE+ ++  +A
Sbjct  61   TASDISEEAKIRAMPTFQVYKDGQKIDELVGANPTALESLVQKSLA 106

Sequence Alignment: 4. Allergen Name: Asp f 28.0101 Sequence ID: AJ937744

 Score = 87.7 bits 314,  Expect = 8e-20
 Identities = 49/104 47%, Positives = 69/104 66%, Gaps = 4/104 3%
Query  1    MSHNVEKITDAKVFKEKVQEGSGPVIVDCSATWCGPCKAISPVFQRLSTSEEFKNAKFYE 60
            MSH      D  +   K    SGPV+VD  ATWCGPC+A++P    L  SE++ N +F +
Sbjct  1    MSHGKVIAVDNPIIY-KALTSSGPVVVDFFATWCGPCRAVAPKVGEL--SEKYSNVRFIQ 57
Query  61   IDVDELSEVAAELGVRAMPTFMFFKDGQKVNE-VVGANPPALEAAIKA 107
            +DVD++  VA E+ +RAMPTF+++KDGQ + + VVG N   LE  IK+
Sbjct  58   VDVDKVRSVAHEMNIRAMPTFVLYKDGQPLEKRVVGGNVRELEEMIKS 105

Sequence Alignment: 5. Allergen Name: Tri a 25.0101 Sequence ID: Q9LDX4

 Score = 75.1 bits 265,  Expect = 6e-16
 Identities = 40/103 38%, Positives = 66/103 64%, Gaps = 5/103 4%
Query  3    HNVEKITDAKVFKEKVQEGSGPVIVDCSATWCGPCKAISPVFQRLSTSEEFKNAKFYEID 62
            H++E+ T  ++  E+       V++D +A+WCGPC+ ++P+F  L  +++F  A F ++D
Sbjct  22   HSLEQWT-MQI--EEANAAKKLVVIDFTASWCGPCRIMAPIFADL--AKKFPAAVFLKVD 76
Query  63   VDELSEVAAELGVRAMPTFMFFKDGQKVNEVVGANPPALEAAIKAHVA 110
            VDEL  +A ++ V AMPTF+F K+G   + VVGA    L   +  H A
Sbjct  77   VDELKSIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTNKVGLHAA 124

Sequence Alignment: 6. Allergen Name: Fus c 2 Sequence ID: AAL79931

 Score = 72.0 bits 253,  Expect = 5e-15
 Identities = 40/89 44%, Positives = 61/89 68%, Gaps = 6/89 6%
Query  16   EKVQEGSGPVIVDCSATWCGPCKAISPVFQRLSTSEEFKNA-KFYEIDVDELSEVAAELG 74
            +K+   +  V+VD  A WC PCKAI+PV+++LST     +   F +++VD + + A + G
Sbjct  12   QKLLSSTTYVVVDFFADWCPPCKAIAPVYEQLSTKHSVPDVLAFAKVNVDHVQDAAQQYG 71
Query  75   VRAMPTFMFFKDGQKV----NEVV-GANPPALEAA 104
            + AMPTFMFFK+G++V      V+ GA+P  L AA
Sbjct  72   ITAMPTFMFFKEGKQVAVNGQAVIKGADPRTLGAA 106

Sequence Alignment: 7. Allergen Name: Zea m 25.0101 Sequence ID: Q4W1F7

 Score = 71.7 bits 252,  Expect = 6e-15
 Identities = 34/104 32%, Positives = 63/104 60%, Gaps = 2/104 1%
Query  5    VEKITDAKVFKEKVQEGSGPVIVDCSATWCGPCKAISPVFQRLSTSEEFKNAKFYEIDVD 64
            +  + +  +  E+       V++D +ATWC PC+A++P+F  ++  ++  N  F ++DVD
Sbjct  24   IHSLEEWSIQIEEANSAKKLVVIDFTATWCPPCRAMAPIFADMA--KKSPNVVFLKVDVD 81
Query  65   ELSEVAAELGVRAMPTFMFFKDGQKVNEVVGANPPALEAAIKAHVA 110
            E+  +A ++ V AMPTF+F ++G   + VVGA    L   ++ H+A
Sbjct  82   EMKTIAEQFSVEAMPTFLFMREGDVKDRVVGAAKEELARKLELHMA 127

Sequence Alignment: 8. Allergen Name: Plo i 2.0101 Sequence ID: CBW45298

 Score = 66.6 bits 232,  Expect = 2e-13
 Identities = 36/102 35%, Positives = 59/102 57%, Gaps = 3/102 2%
Query  1    MSHNVEKITDAKVFKEKVQEGSGPVIVDCSATWCGPCKAISPVFQRLSTSEEFKNAKFYE 60
            MS +++ + D  +     + G   V++D  ATWCGPCK I P +  ++ +E   +    +
Sbjct  1    MSIHIKDVED--LTARLTEAGDKLVVIDFMATWCGPCKIIGPKLDEIA-AEMADSIVVVK 57
Query  61   IDVDELSEVAAELGVRAMPTFMFFKDGQKVNEVVGANPPALEAAI 105
            +DVDE  ++A E  +  MPTF+F K+G+ V +  GAN   L + I
Sbjct  58   VDVDECEDIATEYSINTMPTFVFVKNGKPVEQFSGANVEKLRSTI 102

Sequence Alignment: 9. Allergen Name: Alt a 4 Sequence ID: CAA58999

 Score = 35.8 bits 112,  Expect = 0.001
 Identities = 24/70 34%, Positives = 43/70 61%, Gaps = 8/70 11%
Query  11   AKVFKEKVQEGSGPVIVDCSATWCGPCKAISPVFQRLS---TSEEF-KNAKFYEIDVDEL 66
            A  +K+ V +    V+V+  A WCG CKA++P ++ L     S+E+ K     ++D   L
Sbjct  240  AHNYKDVVIDNDKDVLVEFYAPWCGHCKALAPKYEELGQLYASDELSKLVTIAKVDAT-L 298
Query  67   SEVAAEL-GVRAMPTFMF 83
            ++V  E+ G   +P+ +F
Sbjct  299  NDVPDEIQGF--LPSSLF 314

SDAP Home Page | Search SDAP | SDAP Manual | SDAP FAQ | Contact  
UTMB | Search | Directories | UTMB Map | News | Employment | Sitemap 
This site published by Surendra Negi
Copyright   2001-2023  The University of Texas Medical Branch. Please review our privacy policy and Internet guidelines.