The University of Texas Medical Branch
Department of Biochemistry and Molecular Biology Sealy Center for Structural Biology Computational Biology


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                SDAP - Structural Database of Allergenic Proteins
Go to: SDAP All allergens       Go to: SDAP Food allergens
Send a comment to Werner Braun      Submit new allergen information to SDAP
  
Alphabetical listing of allergens: A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
Access to SDAP is available free of charge for Academic and non-profit use.
Licenses for commercial use can be obtained by contacting W. Braun (webraun@utmb.edu).
Secure access to SDAP is available from https://fermi.utmb.edu/SDAP
Allergen Info Description
Allergen ID 325
Allergen Scientific Name Ara h 2.0101
Allergen Species - Systematic Name Arachis hypogaea
Allergen Species - Common Name peanut
Allergen Common source foods
Allergen Common name
Allergen Keywords Conglutin
Allergen IUIS (Yes=1, No=0) 1
Ara h 2.0101 - References
ID Reference
No reference found!
Ara h 2.0101 - Protein Sequences
Source Link to source
GenBank 9186485
GenBank 15418705
Ara h 2.0101 - PDB Structure
PDB Id PDB Name PDB Entry Deposition Date Experiment Type Observation
325 259 3OB4 2010-08-06 X-ray diffraction resolution 2.71 A maltose-binding protein (MBP)-Ara h 2 fusion system
3OB4.pdb


Ara h 2.0101 - Theoretical Model Structure
Model ID PDB file PDB Snapshot PDB Snapshot 90 PDB Snapshot 180 PDB Snapshot 270 3D PDB View
283 GetModel Model Pic Model Pic Model Pic Model Pic Click here
626 GetModel Model Pic Model Pic Model Pic Model Pic Click here
Ara h 2.0101 - Sequence Search
Sequence Header Sequence
Ara h 2.0101
SDAP Sequence ID: 283
SDAP Allergen ID: 325
LTILVALALFLLAAHASARQQWELQGDRRCQSQLERANLRPCEQHLMQKIQRDEDSYERDPYSPSQDPYSPSPYDRRGAGSSQHQERCCNELNEFENNQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRAPQRCDLDVESGGRDRY
View 3D Structure Click here to view 3D model structure of allergen
Fasta Search in SDAP
Blast Swissprot database search at NCBI
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Ara h 2.0101
SDAP Sequence ID: 626
SDAP Allergen ID: 325
MAKLTILVALALFLLAAHASARQQWELQGDRRCQSQLERANLRPCEQHLMQKIQRDEDSYERDPYSPSQDPYSPSPYDRRGAGSSQHQERCCNELNEFENNQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRAPQRCDLDVESGG
View 3D Structure Click here to view 3D model structure of allergen
Fasta Search in SDAP
Blast Swissprot database search at NCBI
Blast PDB database search at NCBI
Blast NR database search at NCBI
Expasy Blast Search
Ara h 2.0101 - Statistics from Alphafold ( SI is sequence id, Best template format: PDB_ChainID)
Allergen Name pLDDT Score pTM Score Best PDB template %Seq ID Align length Seq length Query Range Sequence Range E-Value Bit Score Download Model
Ara h 2.0101 71.3 0.6 3OB4_A 100 126 156 31 - 156 371 - 496 0 268 Download (SI: 626)
Ara h 2.0101 74.25 0.6 3OB4_A 100 130 157 28 - 157 371 - 500 0 276 Download (SI: 283)
Ara h 2.0101 - Alphafold Theoretical Model Structure
Model Structure
626_relaxed_rank_1_model_2.pdb


Coverage Plddt
Ara h 2.0101 - Protein Sequence Properties!
Protein Sequence Protease cleavage sites PeptideCutter at ExPASy
9186485 Click here to process the data
15418705 Click here to process the data
Ara h 2.0101 - PFAM Information
SeqID Aller ID AlnS AlnE EnvS EnvE PFAM ID Family Type Clan Description
283 325 42 145 42 145 PF00234 Tryp_alpha_amyl Domain CL0482 Protease inhibitor/seed storage/LTP family
626 325 45 148 45 148 PF00234 Tryp_alpha_amyl Domain CL0482 Protease inhibitor/seed storage/LTP family
Where: AlnS= Alignment start position, AlnE= Alignment end position, EnvS= Envelope start position, EnvE= Envelope end position.

Welcome

Predicted B-Cell epitope using BCEP method for Ara h 2.0101

Probe radius : 1.400

POLAR area/energy = 5518.20

APOLAR area/energy = 6959.43

Total area/energy = 12477.64

Number of surface atoms = 871

Number of buried atoms = 396

Residues Predicted with high probability (in top five patches) are: 47,50,51,52,54,55,84,87,63,64,65,66,67,70,71,72,73 , and medium probability (next top five patches) are : 73,74,43,44,46,68,69,119,62,120,121,122,123,124,125,126,127,128 . Predicted residues are shown in red and green color stick representation.

Original PDB file 2521.test.pdb
Original PDB file with surface residue only. All amino acid residue are replaced by their CB atom, in case of GLY CA atom is used. Solvent accessible surface area of each residue is stored in last column of the PDB file. 12521.test.txt
Patch drawn around the residues by patch analysis are stored in this file
How to read: Col 1: Patch No. Col 2: Center Res Name. Col 3: Sum(Pint*Area), Col 4: Sum(Psur*Area), Col 5: Total Residue, Col 6: Interface score, Col 7: Surface Score, Col 8: Max Interface Score, Col 9: Minimum Interface Score
2521.test.tmppat
Residues predicted by patch analysis are stored in this file.
How to read: Col 1: Patch No. Col 2: Center Res Name. Col 3: Res Number Col 4: Neigbouring Res Name, Col 5: Sum(Pint*Area). Col 6: Sum(PSur*Area), Col 7: Sum(Area), Col 8: Similar no of residue in patch (e.g CYS, CYS = 2)
2521.test.res
All residues scored by patch analysis are stored in this file.
How to read: Col 1: Patch No. Col 2: Center Res Name. Col 3: Sum(Pint*Area)/sum(Area), Col 4: Sum(Psur*Area)/sum(Area), Col 5: Total Residue
2521.test.resALL

[For BCEP predicted results, please cite our websites http://fermi.utmb.edu/ http://curie.utmb.edu/ for your future publications (Negi et al., Bioinformatics, 23, 3397-3399, 2007 , Negi et al., J. Mol. Model., 13, 1157-1167, 2007; Negi et al., J. Mol. Model., 12, 921-929, 2006)]



List of B-cell epitopes predicted by BepiPred method using a window size of 9 amino acids
Peptides predicted from BepiPred method can be used to search related peptides in SDAP using PD search and Cross-React method.
Please note: BepiPred Epitopes are predicted using BepiPred webserver implemented in IEDB Analysis Resource at http://tools.iedb.org/main/bcell/
Cleck here for epitopes predicted by BepiPred method

Ara h 2.0101 - Epitope Information from published data
No. Position Epitope Sequence Epitope Type View epitope Search epitope in SDAP PD search in SDAP Cross-React search
1 15-24 HASARQQWEL IgE Click here to find exact epitope Click here to find similar epitopes Click here for Cross-React search
2 21-28 QWELQGDR IgE Click here to find exact epitope Click here to find similar epitopes Click here for Cross-React search
3 27-36 DRRCQSQLER IgE Click here to find exact epitope Click here to find similar epitopes Click here for Cross-React search
4 39-48 LRPCEQHLMQ IgE Click here to find exact epitope Click here to find similar epitopes Click here for Cross-React search
5 49-56 KIQRDEDS IgE Click here to find exact epitope Click here to find similar epitopes Click here for Cross-React search
6 59-64 RDPYSP IgE Click here to find exact epitope Click here to find similar epitopes Click here for Cross-React search
7 65-72 SQDPYSPS IgE Click here to find exact epitope Click here to find similar epitopes Click here for Cross-React search
8 117-122 LQGRQQ IgE Click here to find exact epitope Click here to find similar epitopes Click here for Cross-React search
9 127-132 KRELRNL IgE Click here to find exact epitope Click here to find similar epitopes Click here for Cross-React search
10 143-150 QRCDLDVE IgE Click here to find exact epitope Click here to find similar epitopes Click here for Cross-React search
1 19-38 RQQWELQGDRRCQSQLERAN T-cell Click here to find exact epitope Click here to find similar epitopes Click here for Cross-React search
2 28-47 RRCQSQLERANLRPCEQHLM T-cell Click here to find exact epitope Click here to find similar epitopes Click here for Cross-React search
3 73-92 PYDRRGAGSSQHQERCCNEL T-cell Click here to find exact epitope Click here to find similar epitopes Click here for Cross-React search
4 100-119 RCMCEALQQIMENQSDRLQG T-cell Click here to find exact epitope Click here to find similar epitopes Click here for Cross-React search
626_relaxed_rank_1_model_2.pdb



Epitope Reference ( ID 30): I. N. Glaspole, M. P. de Leon, J. M. Rolland, and R. E. O'Hehir, Characterization of the T-cell epitopes of a major peanut allergen, Ara h 2, Allergy 2005, 60, 35-40.
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