The University of Texas Medical Branch
Department of Biochemistry and Molecular Biology Sealy Center for Structural Biology Computational Biology

SDAP Home Page
SDAP Overview

Search SDAP

SDAP Tools
FAO/WHO Allergenicity Test
FASTA Search in SDAP
Peptide Match
Peptide Similarity
Peptide-Protein PD Index
Aller_ML, Allergen Markup Language

About SDAP
General Information
Who Are We
Advisory Board
New Allergen Submission form

Allergy Links

Our Software Tools

Allergen Databases
WHO/IUIS Allergen Nomenclature database
FARRP Allergen Protein Database (University of Nebraska)
Allergen Database for Food Safety (ADFS)
COMPARE database
ALLFAM (Medical University of Vienna)
Allermatch (Wageninen University)
Allergome Database

Protein Databases
MMDB - Entrez
NCBI - Entrez

Protein Classification

Bioinformatics Servers
Peptide Match @ PIR
ClustalW @ EMBL - EBI

                SDAP 2.0 - Structural Database of Allergenic Proteins
Go to: SDAP All allergens       Go to: SDAP Food allergens
Send a comment to Werner Braun      Submit new allergen information to SDAP
Alphabetical listing of allergens: A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Access to SDAP is available free of charge for Academic and non-profit use.< Licenses for commercial use can be obtained by contacting W. Braun ( Secure access to SDAP is available from

Allergen Info Description
Allergen ID 1629
Allergen Scientific Name Bomb m 5.0101
Allergen Species - Systematic Name Bombyx mori
Allergen Species - Common Name Silk moth
Allergen Common source insects
Allergen Common name Animalia Arthropoda
Allergen Keywords 30 kDa Lipoprotein
Allergen IUIS (Yes=1, No=0) 1
Bomb m 5.0101 - References
ID Reference
Pubmed ID: 25379889
Pietrzyk AJ, Bujacz A, Łochynska M, Jaskolski M, Bujacz G. Crystal structure of Bombyx mori lipoprotein 6: comparative structural analysis of the 30-kDa lipoprotein family. PLoS One. 2014 Nov 7;9(11):e108761. doi: 10.1371/journal.pone.0108761. PMID: 25379889; PMCID: PMC4224370.
Bomb m 5.0101 - Protein Sequences
Source Link to source
GenBank 4PC4_A
Bomb m 5.0101 - PDB Structure
PDB Id PDB Name PDB Entry Deposition Date Experiment Type Observation
1629 322 4PC4 2014-04-14 X-ray diffraction resolution 1.8 A Crystal structure of Bombyx mori lipoprotein 6.

Bomb m 5.0101 - Sequence Search :
Sequence Header Sequence
Bomb m 5.0101
SDAP Sequence ID: 1397
SDAP Allergen ID: 1629
View 3D Structure Click here to view 3D model structure of allergen
Fasta Search in SDAP
Blast Swissprot database search at NCBI
Blast PDB database search at NCBI
Blast NR database search at NCBI
Bomb m 5.0101 - Statistics from Alphafold ( SI is sequence id, Best template format: PDB_ChainID)
Allergen Name pLDDT Score pTM Score Best PDB template %Seq ID Align length Seq length Query Range Sequence Range E-Value Bit Score Download Model
Bomb m 5.0101 93.6 0.83 4PC4_A 100 245 245 1 - 245 1 - 245 0 508 Download (SI: 1397)
Bomb m 5.0101 - Alphafold Theoretical Model Structure
Model Structure

Coverage Plddt
Bomb m 5.0101 - Protein Sequence Properties!
Protein Sequence Protease cleavage sites PeptideCutter at ExPASy
4PC4_A Click here to process the data
Bomb m 5.0101 - PFAM Information
SeqID Aller ID AlnS AlnE EnvS EnvE PFAM ID Family Type Clan Description
1397 1629 13 243 12 244 PF03260 Lipoprotein_11 Family CL0066 Lepidopteran low molecular weight (30 kD) lipoprotein
Where: AlnS= Alignment start position, AlnE= Alignment end position, EnvS= Envelope start position, EnvE= Envelope end position.

List of B-cell epitopes predicted by BepiPred method using a window size of 9 amino acids

Cleck here for epitopes predicted by BepiPred method
Bomb m 5.0101 - Epitope Information from published data
No. Position Epitope Sequence Epitope Type View epitope Search epitope in SDAP PD search in SDAP Cross-React search
No epitope information found!
SDAP Home Page | Search SDAP | SDAP Manual | SDAP FAQ | Contact  
UTMB | Search | Directories | UTMB Map | News | Employment | Sitemap 
This site published by Surendra Negi
Copyright   2001-2023  The University of Texas Medical Branch. Please review our privacy policy and Internet guidelines.