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Department of Biochemistry and Molecular Biology Sealy Center for Structural Biology Computational Biology



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                SDAP 2.0 - Structural Database of Allergenic Proteins
Go to: SDAP All allergens       Go to: SDAP Food allergens
Send a comment to Werner Braun      Submit new allergen information to SDAP
  
Alphabetical listing of allergens: A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Access to SDAP is available free of charge for Academic and non-profit use.< Licenses for commercial use can be obtained by contacting W. Braun (webraun@utmb.edu). Secure access to SDAP is available from https://fermi.utmb.edu/SDAP

Allergen Info Description
Allergen ID 321
Allergen Scientific Name Gly m 1
Allergen Species - Systematic Name Glycine max
Allergen Species - Common Name soybean
Allergen Common source foods
Allergen Common name
Allergen Keywords P34, 34 kDa maturing seed vacuolar thiol protease; Hydrophobic seed protein; EC
Allergen IUIS (Yes=1, No=0) 1

Gly m 1 : There are iso allergen in the table! Click on each iso-allergen for more information.

ID Allergen Name
1 Gly m 1.0101
2 Gly m 1.0102
Gly m 1 - References
ID Reference
Pubmed ID: 7603155
Gonzalez R, Varela J, Carreira J, Polo F, Soybean hydrophobic protein and soybean hull allergy. Lancet. 1995 Jul 1;346(8966):48-9.
Pubmed ID: 14564369
Gijzen M, Gonzalez R, Barber D, Polo F, Levels of airborne Gly m 1 in regions of soybean cultivation. J Allergy Clin Immunol. 2003 Oct;112(4):803-5.
Pubmed ID: 10696857
Gonzalez R, Duffort O, Calabozo B, Barber D, Carreira J, Polo F, Monoclonal antibody-based method to quantify Gly m 1. Its application to assess Allergy. 2000 Jan;55(1):59-64. environmental exposure to soybean dust.
Gly m 1 - Protein Sequences
Source Link to source
GenBank 123506
GenBank 1199563
SwissProt P22895
Gly m 1 - Theoretical Model Structure
Model ID PDB file PDB Snapshot PDB Snapshot 90 PDB Snapshot 180 PDB Snapshot 270 3D PDB View
535 GetModel Model Pic Model Pic Model Pic Model Pic Click here
684 GetModel Model Pic Model Pic Model Pic Model Pic Click here
819 GetModel Model Pic Model Pic Model Pic Model Pic Click here
Gly m 1 - Sequence Search :
Sequence Header Sequence
Gly m 1
SDAP Sequence ID: 535
SDAP Allergen ID: 321
ALITRPSCPDLSICLNILGGSLGTVDDCCALIGGLGDIEAIVCLCIQLRALGILNLNRNLQLILNSCGRSYPSNATCPRT
View 3D Structure Click here to view 3D model structure of allergen
Fasta Search in SDAP
Blast Swissprot database search at NCBI
Blast PDB database search at NCBI
Blast NR database search at NCBI
Gly m 1
SDAP Sequence ID: 684
SDAP Allergen ID: 321
MGFLVLLLFSLLGLSSSSSISTHRSILDLDLTKFTTQKQVSSLFQLWKSEHGRVYHNHEEEAKRLEIFKNNSNYIRDMNANRKSPHSHRLGLNKFADITPQEFSKKYLQAPKDVSQQIKMANKKMKKEQYSCDHPPASWDWRKKGVITQVKYQGGCGRGWAFSATGAIEAAHAIATGDLVSLSEQELVDCVEESEGSYNGWQYQSFEWVLEHGGIATDDDYPYRAKEGRCKANKIQDKVTIDGYETLIMSDESTESETEQAFLSAILEQPISVSIDAKDFHLYTGGIYDGENCTSPYGINHFVLLVGYGSADGVDYWIAKNSWGEDWGEDGYIWIQRNTGNLLGVCGMNYFASYPTKEESETLVSARVKGHRRVDHSPL
View 3D Structure Click here to view 3D model structure of allergen
Fasta Search in SDAP
Blast Swissprot database search at NCBI
Blast PDB database search at NCBI
Blast NR database search at NCBI
Gly m 1
SDAP Sequence ID: 819
SDAP Allergen ID: 321
MGFLVLLLFSLLGLSSSSSISTHRSILDLDLTKFTTQKQVSSLFQLWKSEHGRVYHNHEEEAKRLEIFKNNSNYIRDMNANRKSPHSHRLGLNKFADITPQEFSKKYLQAPKDVSQQIKMANKKMKKEQYSCDHPPASWDWRKKGVITQVKYQGGCGRGWAFSATGAIEAAHAIATGDLVSLSEQELVDCVEESEGSYNGWQYQSFEWVLEHGGIATDDDYPYRAKEGRCKANKIQDKVTIDGYETLIMSDESTESETEQAFLSAILEQPISVSIDAKDFHLYTGGIYDGENCTSPYGINHFVLLVGYGSADGVDYWIAKNSWGFDWGEDGYIWIQRNTGNLLGVCGMNYFASYPTKEESETLVSARVKGHRRVDHSPL
View 3D Structure Click here to view 3D model structure of allergen
Fasta Search in SDAP
Blast Swissprot database search at NCBI
Blast PDB database search at NCBI
Blast NR database search at NCBI
Gly m 1 - Statistics from Alphafold ( SI is sequence id, Best template format: PDB_ChainID)
Allergen Name pLDDT Score pTM Score Best PDB template %Seq ID Align length Seq length Query Range Sequence Range E-Value Bit Score Download Model
Gly m 1 86.25 0.81 2B1M_A 78.689 244 379 136 - 379 3 - 246 0 391 Download (SI: 684)
Gly m 1 87 0.85 2B1M_A 78.279 244 379 136 - 379 3 - 246 0 388 Download (SI: 819)
Gly m 1 86.85 0.72 1HYP_A 100 80 80 1 - 80 1 - 80 0 153 Download (SI: 535)
Gly m 1 - Alphafold Theoretical Model Structure
Model Structure
819_relaxed_rank_1_model_2.pdb


Coverage Plddt
Gly m 1 - Protein Sequence Properties!
Protein Sequence Protease cleavage sites PeptideCutter at ExPASy
123506 Click here to process the data
1199563 Click here to process the data
P22895 Click here to process the data
Gly m 1 - PFAM Information
SeqID Aller ID AlnS AlnE EnvS EnvE PFAM ID Family Type Clan Description
535 321 10 78 4 78 PF14547 Hydrophob_seed Domain CL0482 Hydrophobic seed protein
684 321 44 103 44 103 PF08246 Inhibitor_I29 Domain No_clan Cathepsin propeptide inhibitor domain (I29)
684 321 136 355 135 356 PF00112 Peptidase_C1 Domain CL0125 Papain family cysteine protease
819 321 44 103 44 103 PF08246 Inhibitor_I29 Domain No_clan Cathepsin propeptide inhibitor domain (I29)
819 321 136 355 135 356 PF00112 Peptidase_C1 Domain CL0125 Papain family cysteine protease
Where: AlnS= Alignment start position, AlnE= Alignment end position, EnvS= Envelope start position, EnvE= Envelope end position.

List of B-cell epitopes predicted by BepiPred method using a window size of 9 amino acids

Cleck here for epitopes predicted by BepiPred method
Gly m 1 - Epitope Information from published data
No. Position Epitope Sequence Epitope Type View epitope Search epitope in SDAP PD search in SDAP Cross-React search
No epitope information found!
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