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                SDAP 2.0 - Structural Database of Allergenic Proteins
Go to: SDAP All allergens       Go to: SDAP Food allergens
Send a comment to Werner Braun      Submit new allergen information to SDAP
  
Alphabetical listing of allergens: A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Access to SDAP is available free of charge for Academic and non-profit use.< Licenses for commercial use can be obtained by contacting W. Braun (webraun@utmb.edu). Secure access to SDAP is available from https://fermi.utmb.edu/SDAP

Allergen Info Description
Allergen ID 1968
Allergen Scientific Name Gos h 1
Allergen Species - Systematic Name Gossypium hirsutum
Allergen Species - Common Name Cotton
Allergen Common source Plant
Allergen Common name Plantae Magnoliopsida
Allergen Keywords Seed storage protein, Vicilin C72
Allergen IUIS (Yes=1, No=0) 0
ID Allergen Name
Gos h 1 - References
ID Reference
Pubmed ID: 36838575
Mattison CP, He Z, Zhang D, Dupre R, Lloyd SW. Cross-Serological Reaction of Glandless Cottonseed Proteins to Peanut and Tree Nut Allergic IgE. Molecules. 2023 Feb 7;28(4):1587. doi: 10.3390/molecules28041587. PMID: 36838575; PMCID: PMC9967559.
Pubmed ID: 24302475
Chlan CA, Pyle JB, Legocki AB, Dure L 3rd. Developmental biochemistry of cottonseed embryogenesis and germination XVIII cDNA and amino acid sequences of members of the storage protein families. Plant Mol Biol. 1986 Nov;7(6):475-89. doi: 10.1007/BF00020331. PMID: 24302475.
Gos h 1 - Protein Sequences
Source Link to source
SwissProt P09801
Gos h 1 - Sequence Search :
Sequence Header Sequence
Gos h 1
SDAP Sequence ID: 1712
SDAP Allergen ID: 1968
MVRNKSACVVLLFSLFLSFGLLCSAKDFPGRRGDDDPPKRYEDCRRRCEWDTRGQKEQQQCEESCKSQYGEKDQQQRHRPEDPQRRYEECQQECRQQEERQRPQCQQRCLKRFEQEQQQSQRQFQECQQHCHQQEQRPERKQQCVRECRERYQENPWRREREEEAEEEETEEGEQEQSHNPFHFHRRSFQSRFREEHGNFRVLQRFASRHPILRGINEFRLSILEANPNTFVLPHHCDAEKIYLVTNGRGTLTFLTHENKESYNVVPGVVVRVPAGSTVYLANQDNKEKLIIAVLHRPVNNPRQFEEFFPAGSQRPQSYLRAFSREILEPAFNTRSEQLDELFGGRQSHRRQQGQGMFRKASQEQIRALSQEATSPREKSGERFAFNLLYRTPRYSNQNGRFYEACPREFRQLSDINVTVSALQLNQGSIFVPHYNSKATFVVLVNEGNGYVEMVSPHLPRQSSFEEEEEQQQEQEQEEERRSGQYRKIRSQLSRGDIFVVPANFPVTFVASQNQNLRMTGFGLYNQNINPDHNQRIFVAGKINHVRQWDSQAKELAFGVSSRLVDEIFNNNPQESYFVSRQRQRASE
View 3D Structure Click here to view 3D model structure of allergen
Fasta Search in SDAP
Blast Swissprot database search at NCBI
Blast PDB database search at NCBI
Blast NR database search at NCBI
Gos h 1 - Statistics from Alphafold ( SI is sequence id, Best template format: PDB_ChainID)
Allergen Name pLDDT Score pTM Score Best PDB template %Seq ID Align length Seq length Query Range Sequence Range E-Value Bit Score Download Model
Gos h 1 82.45 0.65 5E1R_A 45.783 415 588 174 - 584 5 - 405 0 338 Download (SI: 1712)
Gos h 1 - Alphafold Theoretical Model Structure
Model Structure
1712_relaxed_rank_1_model_3.pdb


Coverage Plddt
Gos h 1 - Protein Sequence Properties!
Protein Sequence Protease cleavage sites PeptideCutter at ExPASy
P09801 Click here to process the data
Gos h 1 - PFAM Information
SeqID Aller ID AlnS AlnE EnvS EnvE PFAM ID Family Type Clan Description
1712 1968 29 173 29 176 PF04702 Vicilin_N Family No_clan Vicilin N terminal region
1712 1968 196 338 180 340 PF00190 Cupin_1 Domain CL0029 Cupin
1712 1968 386 541 386 565 PF00190 Cupin_1 Domain CL0029 Cupin
Where: AlnS= Alignment start position, AlnE= Alignment end position, EnvS= Envelope start position, EnvE= Envelope end position.

List of B-cell epitopes predicted by BepiPred method using a window size of 9 amino acids

Cleck here for epitopes predicted by BepiPred method
Gos h 1 - Epitope Information from published data
No. Position Epitope Sequence Epitope Type View epitope Search epitope in SDAP PD search in SDAP Cross-React search
No epitope information found!
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