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                SDAP 2.0 - Structural Database of Allergenic Proteins
Go to: SDAP All allergens       Go to: SDAP Food allergens
Send a comment to Werner Braun      Submit new allergen information to SDAP
  
Alphabetical listing of allergens: A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Access to SDAP is available free of charge for Academic and non-profit use.< Licenses for commercial use can be obtained by contacting W. Braun (webraun@utmb.edu). Secure access to SDAP is available from https://fermi.utmb.edu/SDAP

Allergen Info Description
Allergen ID 341
Allergen Scientific Name Ric c 1
Allergen Species - Systematic Name Ricinus communis
Allergen Species - Common Name Castor bean
Allergen Common source foods
Allergen Common name
Allergen Keywords 2S albumin
Allergen IUIS (Yes=1, No=0) 1
ID Allergen Name
Ric c 1 - References
ID Reference
Pubmed ID: 2274038
Irwin SD, Keen JN, Findlay JB, Lord JM. The Ricinus communis 2S albumin precursor: a single preproprotein may be processed into two different heterodimeric storage proteins. Mol Gen Genet. 1990 Jul;222(2-3):400-8. doi: 10.1007/BF00633846. PMID: 2274038.
Ric c 1 - Protein Sequences
Source Link to source
SwissProt P01089
Ric c 1 - PDB Structure
PDB Id PDB Name PDB Entry Deposition Date Experiment Type Observation
341 260 1PSY 2003-06-22 Solution NMR
1PSY.pdb


Ric c 1 - Sequence Search :
Sequence Header Sequence
Ric c 1
SDAP Sequence ID: 248
SDAP Allergen ID: 341
MAKLIPTIALVSVLLFIIANASFAYRTTITTIEIDESKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSPGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRCMRQTRTNPSQQGCRGQIQEQQNLRQCQEYIKQQVSGQGPRRSDNQERSLRGCCDHLKQMQSQCRCEGLRQAIEQQQSQGQLQGQDVFEAFRTAANLPSMCGVSPTECRF
View 3D Structure Click here to view 3D model structure of allergen
Fasta Search in SDAP
Blast Swissprot database search at NCBI
Blast PDB database search at NCBI
Blast NR database search at NCBI
Ric c 1 - Statistics from Alphafold ( SI is sequence id, Best template format: PDB_ChainID)
Allergen Name pLDDT Score pTM Score Best PDB template %Seq ID Align length Seq length Query Range Sequence Range E-Value Bit Score Download Model
Ric c 1 72.45 0.4 1PSY_A 97.581 124 258 33 - 156 2 - 125 0 233 Download (SI: 248)
Ric c 1 - Alphafold Theoretical Model Structure
Model Structure
248_relaxed_rank_1_model_3.pdb


Coverage Plddt
Ric c 1 - Protein Sequence Properties!
Protein Sequence Protease cleavage sites PeptideCutter at ExPASy
P01089 Click here to process the data
Ric c 1 - PFAM Information
SeqID Aller ID AlnS AlnE EnvS EnvE PFAM ID Family Type Clan Description
248 341 61 151 30 157 PF00234 Tryp_alpha_amyl Domain CL0482 Protease inhibitor/seed storage/LTP family
248 341 162 256 158 256 PF00234 Tryp_alpha_amyl Domain CL0482 Protease inhibitor/seed storage/LTP family
Where: AlnS= Alignment start position, AlnE= Alignment end position, EnvS= Envelope start position, EnvE= Envelope end position.

List of B-cell epitopes predicted by BepiPred method using a window size of 9 amino acids

Cleck here for epitopes predicted by BepiPred method
Ric c 1 - Epitope Information from published data
No. Position Epitope Sequence Epitope Type View epitope Search epitope in SDAP PD search in SDAP Cross-React search
No epitope information found!
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