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Department of Biochemistry and Molecular Biology Sealy Center for Structural Biology Computational Biology



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                SDAP 2.0 - Structural Database of Allergenic Proteins
Go to: SDAP All allergens       Go to: SDAP Food allergens
Send a comment to Werner Braun      Submit new allergen information to SDAP
  
Alphabetical listing of allergens: A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Access to SDAP is available free of charge for Academic and non-profit use.< Licenses for commercial use can be obtained by contacting W. Braun (webraun@utmb.edu). Secure access to SDAP is available from https://fermi.utmb.edu/SDAP

Allergen Info Description
Allergen ID 39
Allergen Scientific Name Sor h 1
Allergen Species - Systematic Name Sorghum halepense
Allergen Species - Common Name Johnson grass
Allergen Common source grass
Allergen Common name Poales
Allergen Keywords Beta-expansin
Allergen IUIS (Yes=1, No=0) 1
ID Allergen Name
Sor h 1 - References
ID Reference
No reference found!
Sor h 1 - Protein Sequences
Source Link to source
GenBank DOI
Sor h 1 - Sequence Search :
Sequence Header Sequence
Sor h 1
SDAP Sequence ID: 1169
SDAP Allergen ID: 39
PPKVAKGKNITETYGSDWLERKATWYGKPTGAGPDDNGGACGYKDVNKAPFNSMGACGNLPIFKDGLCGSCFEIKCDKPKPAECSGEAVVVHITDMNYEQIAAYHFDLAGHAFGAMAKKGQEEKLAKAGIIDMKFRRVKCKYGEKVTFHVEKGSNPNYLALLVKYVDGDGDIVGVDIKEKGGDAYQPLKHSWGAIWRKDSPDPIKFPVTVQITTEGGTKTAYDDVIPEGWKADTTYTAK
View 3D Structure Click here to view 3D model structure of allergen
Fasta Search in SDAP
Blast Swissprot database search at NCBI
Blast PDB database search at NCBI
Blast NR database search at NCBI
Sor h 1 - Statistics from Alphafold ( SI is sequence id, Best template format: PDB_ChainID)
Allergen Name pLDDT Score pTM Score Best PDB template %Seq ID Align length Seq length Query Range Sequence Range E-Value Bit Score Download Model
Sor h 1.0101 95 0.83 1N10_A 72.199 241 239 2 - 239 3 - 241 0 344 Download (SI: 1169)
Sor h 1 - Alphafold Theoretical Model Structure
Model Structure
1169_relaxed_rank_1_model_1.pdb


Coverage Plddt
Sor h 1 - Protein Sequence Properties!
Protein Sequence Protease cleavage sites PeptideCutter at ExPASy
DOI Click here to process the data
Sor h 1 - PFAM Information
SeqID Aller ID AlnS AlnE EnvS EnvE PFAM ID Family Type Clan Description
1169 39 56 134 55 135 PF03330 DPBB_1 Domain CL0199 Lytic transglycolase
1169 39 146 227 146 227 PF01357 Expansin_C Domain CL0159 Expansin C-terminal domain
Where: AlnS= Alignment start position, AlnE= Alignment end position, EnvS= Envelope start position, EnvE= Envelope end position.

List of B-cell epitopes predicted by BepiPred method using a window size of 9 amino acids

Cleck here for epitopes predicted by BepiPred method
Sor h 1 - Epitope Information from published data
No. Position Epitope Sequence Epitope Type View epitope Search epitope in SDAP PD search in SDAP Cross-React search
No epitope information found!
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