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Department of Biochemistry and Molecular Biology Sealy Center for Structural Biology Computational Biology



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                SDAP 2.0 - Structural Database of Allergenic Proteins
Go to: SDAP All allergens       Go to: SDAP Food allergens
Send a comment to Werner Braun      Submit new allergen information to SDAP
  
Alphabetical listing of allergens: A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Access to SDAP is available free of charge for Academic and non-profit use.< Licenses for commercial use can be obtained by contacting W. Braun (webraun@utmb.edu). Secure access to SDAP is available from https://fermi.utmb.edu/SDAP

Allergen Info Description
Allergen ID 559
Allergen Scientific Name Zea m 1
Allergen Species - Systematic Name Zea mays
Allergen Species - Common Name maize, corn
Allergen Common source foods
Allergen Common name
Allergen Keywords beta-expansin 1b
Allergen IUIS (Yes=1, No=0) 0
ID Allergen Name
Zea m 1 - References
ID Reference
No reference found!
Zea m 1 - Protein Sequences
Source Link to source
SwissProt P58738
SwissProt Q07154
Zea m 1 - PDB Structure
PDB Id PDB Name PDB Entry Deposition Date Experiment Type Observation
559 226 2HCZ 2006-06-19 X-ray diffraction resolution 2.75 A
2HCZ.pdb


Zea m 1 - Theoretical Model Structure
Model ID PDB file PDB Snapshot PDB Snapshot 90 PDB Snapshot 180 PDB Snapshot 270 3D PDB View
275 GetModel Model Pic Model Pic Model Pic Model Pic Click here
276 GetModel Model Pic Model Pic Model Pic Model Pic Click here
Zea m 1 - Sequence Search :
Sequence Header Sequence
Zea m 1
SDAP Sequence ID: 275
SDAP Allergen ID: 559
MGSLVNNIMVVGAVLAALVAGGSCGPPKVPPGPNITTNYNGKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVIAKDVIPANWRPDAVYTSNVQFY
View 3D Structure Click here to view 3D model structure of allergen
Fasta Search in SDAP
Blast Swissprot database search at NCBI
Blast PDB database search at NCBI
Blast NR database search at NCBI
Zea m 1
SDAP Sequence ID: 276
SDAP Allergen ID: 559
MTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVFITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYVAVLVKFVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVIAKDIIPANWRPDAVYTSNVQFY
View 3D Structure Click here to view 3D model structure of allergen
Fasta Search in SDAP
Blast Swissprot database search at NCBI
Blast PDB database search at NCBI
Blast NR database search at NCBI
Zea m 1 - Statistics from Alphafold ( SI is sequence id, Best template format: PDB_ChainID)
Allergen Name pLDDT Score pTM Score Best PDB template %Seq ID Align length Seq length Query Range Sequence Range E-Value Bit Score Download Model
Zea m 1 92.4 0.8 2HCZ_X 99.592 245 269 25 - 269 1 - 245 0 505 Download (SI: 275)
Zea m 1 97 0.82 2HCZ_X 97.382 191 191 1 - 191 55 - 245 0 392 Download (SI: 276)
Zea m 1 - Alphafold Theoretical Model Structure
Model Structure
276_relaxed_rank_1_model_1.pdb


Coverage Plddt
Zea m 1 - Protein Sequence Properties!
Protein Sequence Protease cleavage sites PeptideCutter at ExPASy
P58738 Click here to process the data
Q07154 Click here to process the data
Zea m 1 - PFAM Information
SeqID Aller ID AlnS AlnE EnvS EnvE PFAM ID Family Type Clan Description
275 559 80 158 80 159 PF03330 DPBB_1 Domain CL0199 Lytic transglycolase
275 559 172 253 172 253 PF01357 Expansin_C Domain CL0159 Expansin C-terminal domain
276 559 2 80 2 81 PF03330 DPBB_1 Domain CL0199 Lytic transglycolase
276 559 94 175 94 175 PF01357 Expansin_C Domain CL0159 Expansin C-terminal domain
Where: AlnS= Alignment start position, AlnE= Alignment end position, EnvS= Envelope start position, EnvE= Envelope end position.

List of B-cell epitopes predicted by BepiPred method using a window size of 9 amino acids

Cleck here for epitopes predicted by BepiPred method
Zea m 1 - Epitope Information from published data
No. Position Epitope Sequence Epitope Type View epitope Search epitope in SDAP PD search in SDAP Cross-React search
No epitope information found!
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