
SDAP Home Page
SDAP Overview
Use SDAP
SDAP All
SDAP Food
SDAP Tools
FAO/WHO Allergenicity Test
FASTA Search in SDAP
Peptide Match
Peptide Similarity
Peptide-Protein PD Index
Aller_ML, Allergen Markup Language
List SDAP
About SDAP
General Information
Manual
FAQ
Publications
Who Are We
Advisory Board
Allergy Links
Our Software Tools
MPACK
FANTOM
GETAREA
NOAH/DIAMOD
MASIA
PCPMer
InterProSurf
EpiSearch
Protein Databases
PDB
MMDB - Entrez
SWISS-PROT
NCBI - Entrez
PIR
Protein Classification
CATH
CE
FSSP
iProClass
ProtoMap
SCOP
TOPS
VAST
Bioinformatics Servers
@TOME
BLAST @ NCBI
BLAST @ PIR
FASTA @ PIR
Peptide Match @ PIR
ClustalW @ BCM
ClustalW @ EMBL - EBI
ClustalW @ PIR
Bioinformatics Tools
Cn3D
MolMol
Bioinformatics Links
Bioinformatics Links Directory
|
SDAP - Structural Database of Allergenic Proteins
|
SDAP is a Web server that
integrates a database of allergenic proteins with various bioinformatics
tools for performing structural studies related to allergens and characterization of their
epitopes.
The SDAP project is supported by
grants from the National Institute of Health (2R56AI064913),
and the U.S. Environmental Protection Agency under a STAR
Research Assistance Agreement (No. RD 834823).
SDAP database:
- 1526 Allergens and isoallergens: List
- 1312 Protein sequences for allergens and isoallergens: List
- 92 Allergens with PDB structures: List
- 458 3D models for allergens and isoallergens: List
- 29 Allergens with IgE epitope sets: List
- 130 Pfam allergen classes: List
- SDAP Food, for food allergens
- SDAP All allergens
SDAP computational tools:
- Go! FAO/WHO Allergenicity Test
- Go! Search your protein with FASTA against all SDAP allergens
- Go! Search your epitope (peptide) for exact matches in all SDAP allergens
- Go! Search your epitope (peptide) for similar regions in all SDAP allergens, using our original PD sequence similarity index
- Go! Compute the PD sequence similarity index for two sequences provided by the user
- For any epitope in SDAP, search for exact matches in the PIR (Protein Information Resources) database
- For any epitope in SDAP, search for similar regions in all SDAP allergens, using our original PD sequence similarity index
- For any epitope in SDAP, search for exact matches in all SDAP allergens
- FASTA@SDAP: select an SDAP allergen and find similar sequences from SDAP
- BLAST@ExPASy: select an SDAP allergen and find similar sequences in SwissProt and
other databases from the Expert Protein Analysis System (ExPASy) proteomics server
- PROSITE@PIR: select an SDAP allergen and find PROSITE patterns at PIR (Protein Information Resources)
SDAP Lists
- Go! SDAP list of allergens with PDB structure(s)
- Go! SDAP list of allergens with with epitopes
- Go! Other SDAP lists of allergens
- Go! SDAP list of allergen Pfam families. (Link to Pfam)
|
|
|