SDAP Home Page
SDAP Overview
SDAP All
SDAP Food
Use SDAP All
Search SDAP All
List SDAP All
SDAP Food
SDAP Tools
FAO/WHO Allergenicity Test
FASTA Search in SDAP
Peptide Match
Peptide Similarity
Peptide-Protein PD Index
Aller_ML, Allergen Markup Language
List SDAP
About SDAP
General Information
Manual
FAQ
Publications
Who Are We
Advisory Board
Allergy Links
Our Software Tools
MPACK
FANTOM
GETAREA
NOAH/DIAMOD
MASIA
PCPMer
InterProSurf
EpiSearch
Protein Databases
PDB
MMDB - Entrez
SWISS-PROT
NCBI - Entrez
PIR
Protein Classification
CATH
CE
FSSP
iProClass
ProtoMap
SCOP
TOPS
VAST
Bioinformatics Servers
@TOME
BLAST @ NCBI
BLAST @ PIR
FASTA @ PIR
Peptide Match @ PIR
ClustalW @ BCM
ClustalW @ EMBL - EBI
ClustalW @ PIR
Bioinformatics Tools
Cn3D
MolMol
Bioinformatics Links
Bioinformatics Links Directory
|
SDAP - All Allergens
Full FASTA alignment
Sequence name: Query sequence: MATVEVAPAATLQENEAKTVEVIKTEEKTPEEPVAAAPAAVPESEAATTE EPKETTPVEAEAEAEAEAPAAPEAETPVPAEVETKEVAEEPKAAEAEAEE PAATETEKTEKTEAEEPKEVTAAEPVAAVAEETKEETTESAETPAAPPAE EEKAEEATTDVPVEKTEE
Alignment made with FASTA 3.45 As explained in the FASTA manual, the bit score is equivalent to the bit score reported by BLAST. A 1 bit increase in score corresponds to a 2-fold reduction in expectation, and a 10-bit increase implies 1000-fold lower expectation. Sequences with E values < 0.01 are almost always homologous.
Alignment 1 Sequence 1: Sequence 2: Allergen Pru ar 5.0101, Sequence: Q9XF96 Sequence identity: 100.00 (168/168) Sequence 1 MATVEVAPAATLQENEAKTVEVIKTEEKTPEEPVAAAPAAVPESEAATTE MATVEVAPAATLQENEAKTVEVIKTEEKTPEEPVAAAPAAVPESEAATTE Sequence 2 MATVEVAPAATLQENEAKTVEVIKTEEKTPEEPVAAAPAAVPESEAATTE
Sequence 1 EPKETTPVEAEAEAEAEAPAAPEAETPVPAEVETKEVAEEPKAAEAEAEE EPKETTPVEAEAEAEAEAPAAPEAETPVPAEVETKEVAEEPKAAEAEAEE Sequence 2 EPKETTPVEAEAEAEAEAPAAPEAETPVPAEVETKEVAEEPKAAEAEAEE
Sequence 1 PAATETEKTEKTEAEEPKEVTAAEPVAAVAEETKEETTESAETPAAPPAE PAATETEKTEKTEAEEPKEVTAAEPVAAVAEETKEETTESAETPAAPPAE Sequence 2 PAATETEKTEKTEAEEPKEVTAAEPVAAVAEETKEETTESAETPAAPPAE
Sequence 1 EEKAEEATTDVPVEKTEE EEKAEEATTDVPVEKTEE Sequence 2 EEKAEEATTDVPVEKTEE
Alignment 2 Sequence 1: Sequence 2: Allergen Act d a, Sequence: AAA53071 Sequence identity: 48.81 (82/168) Sequence 1 MATVEVAPAAT-LQENEAKTVEVIKTEEKTPEEPVAAAPA-AVPESEAAT MATVEV-PA-T-L-ENE----EV-K--E--PE--VAA-PA-A-P------ Sequence 2 MATVEVTPAVTALPENETAD-EVTKPQEPQPEAAVAAPPAPAEP-----V
Sequence 1 TEEPKETTPVEAEAEAEAEAPAAPEAETPVPAEVETKEVAEEPK------ TEEP----P---EA--E---PAA--A--P--------EV-EEP------- Sequence 2 TEEPEKAAPEAVEAPEE---PAATDAKDPAEVAEAEEEVVEEPQEVPEEP
Sequence 1 AAEAEAEEPAATE--TEKTEKTEAEEPKEVTAAEPVAAVAEETK------ -AEA-A-E--ATE---E-T-------P----A-E--AA--E-T------- Sequence 2 VAEAAAKEVEATEGKAEPTGEMKDKTPEATDAPEAPAAAEEPTDAPEAPA
Sequence 1 --EETTESAETPAA---PPAEE----EKAEEATTDVPVEKTEE --EE-T---E-PA----P-A-E----E--EEA-T-VPV-KTEE Sequence 2 VAEEPTNAPEAPAVGEEPEAKEGKPDEAVEEASTEVPVDKTEE
Alignment 3 Sequence 1: Sequence 2: Allergen Hev b 5, Sequence: Q39967 Sequence identity: 48.21 (81/168) Sequence 1 MATVEVAPAAT-LQENEAKTVEVIKTEEKTPEEPVAAAPAAVPESEAATT -A-VEV--AAT-L--NE--T-EV-K-EE---EEP-AA-PA---E---AT- Sequence 2 -ASVEVESAATALPKNE--TPEVTKAEETKTEEP-AAPPASEQETADAT-
Sequence 1 EEPKETTPVEAEAEAEAEAPAAPEAETPVPAEVETKEVAEEPKAAEAEAE --P----P--A-AE-EA-AP----AE-----EVE--E--EEP-------- Sequence 2 --PEKEEPTAAPAEPEAPAPETEKAE-----EVEKIEKTEEPA-------
Sequence 1 EPAATETEKTEKTEAEEPKEVTAAEPVAAVAEETKEETTESAETPAA--P -P-A--T---EK----EP--V---EP------ETKE--TE----PA---- Sequence 2 -PEADQTTPEEKPA--EPEPVAEEEP----KHETKETETEAPAAPAEGEK
Sequence 1 PAEEEK-----AEEATTDVPVEKTEE PAEEEK-----AE-ATT-VPVEKTEE Sequence 2 PAEEEKPITEAAETATTEVPVEKTEE
Alignment 4 Sequence 1: Sequence 2: Allergen Hev b 5, Sequence: AAC49447 Sequence identity: 48.81 (82/168) Sequence 1 MATVEVAPAAT-LQENEAKTVEVIKTEEKTPEEPVAAAPAAVPESEAATT MA-VEV--AAT-L--NE--T-EV-K-EE---EEP-AA-PA---E---AT- Sequence 2 MASVEVESAATALPKNE--TPEVTKAEETKTEEP-AAPPASEQETADAT-
Sequence 1 EEPKETTPVEAEAEAEAEAPAAPEAETPVPAEVETKEVAEEPKAAEAEAE --P----P--A-AE-EA-AP----AE-----EVE--E--EEP-------- Sequence 2 --PEKEEPTAAPAEPEAPAPETEKAE-----EVEKIEKTEEPA-------
Sequence 1 EPAATETEKTEKTEAEEPKEVTAAEPVAAVAEETKEETTESAETPAA--P -P-A--T---EK----EP--V---EP------ETKE--TE----PA---- Sequence 2 -PEADQTTPEEKPA--EPEPVAEEEP----KHETKETETEAPAAPAEGEK
Sequence 1 PAEEEK-----AEEATTDVPVEKTEE PAEEEK-----AE-ATT-VPVEKTEE Sequence 2 PAEEEKPITEAAETATTEVPVEKTEE
|