The University of Texas Medical Branch
Department of Biochemistry and Molecular Biology Sealy Center for Structural Biology Computational Biology


SDAP Home Page
SDAP Overview

Search SDAP
SDAP All
SDAP Food

SDAP Tools
AllergenAI
FAO/WHO Allergenicity Test
FASTA Search in SDAP
Peptide Match
Peptide Similarity
Peptide-Protein PD Index
Aller_ML, Allergen Markup Language
List SDAP

About SDAP
General Information
Manual
FAQ
Publications
Who Are We
Advisory Board
New Allergen Submission form

Allergy Links

Our Software Tools
MPACK
FANTOM
GETAREA
InterProSurf
EpiSearch

Allergen Databases
WHO/IUIS Allergen Nomenclature database
FARRP Allergen Protein Database (University of Nebraska)
Allergen Database for Food Safety (ADFS)
COMPARE database
ALLFAM (Medical University of Vienna)
Allermatch (Wageninen University)
Allergome Database

Protein Databases
PDB
MMDB - Entrez
SWISS-PROT
NCBI - Entrez
PIR

Protein Classification
CATH
FSSP
iProClass
ProtoMap
SCOP
VAST

Bioinformatics Servers
BLAST @ NCBI
FASTA @ EMBL-EBI
Peptide Match @ PIR
ClustalW @ EMBL - EBI


                SDAP 2.0 - Structural Database of Allergenic Proteins
Go to: SDAP All allergens       Go to: SDAP Food allergens
Send a comment to Werner Braun      Submit new allergen information to SDAP
  
Alphabetical listing of allergens: A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Access to SDAP is available free of charge for Academic and non-profit use.< Licenses for commercial use can be obtained by contacting W. Braun (webraun@utmb.edu). Secure access to SDAP is available from https://fermi.utmb.edu/SDAP


Input Sequence

NEDCTPWTSTLIXPLPXCRNYVXXQAC
Sequence Info Allergen Name Length Opt Bits Score E Value
P16852 Tri a TAI 27 175 49.4 1.6e-09
CAA42453 Tri a TAI 143 176 50.8 3.2e-09
Q41540 Tri a 40.0101 143 176 50.8 3.2e-09
CAA34709 Tri a TAI 143 165 48.1 2.1e-08
CAA49556 Hor v 1 149 152 44.9 2e-07
Please note: Alignment made with FASTA version 36.3.8. As explained in the FASTA manual, the bit score is equivalent to the bit score reported by BLAST. A 1 bit increase in score corresponds to a 2-fold reduction in expectation, and a 10-bit increase implies 1000-fold lower expectation. Sequences with E values < 0.01 are almost always homologous. All FASTA search sequence alignment are printed in Blast format where Query is input sequence, and Sbjct is sequence found in the database.

Sequence Alignment: 1. Allergen Name: Tri a TAI Sequence ID: P16852

 Score = 49.4 bits 175,  Expect = 2e-09
 Identities = 27/27 100%, Positives = 23/27 85%, Gaps = 0/27 0%
Query  1    NEDCTPWTSTLIXPLPXCRNYVXXQAC 27
            NEDCTPWTSTLIXPLPXCRNYVXXQAC
Sbjct  1    NEDCTPWTSTLIXPLPXCRNYVXXQAC 27

Sequence Alignment: 2. Allergen Name: Tri a TAI Sequence ID: CAA42453

 Score = 50.8 bits 176,  Expect = 3e-09
 Identities = 23/27 85%, Positives = 23/27 85%, Gaps = 0/27 0%
Query  1    NEDCTPWTSTLIXPLPXCRNYVXXQAC 27
            NEDCTPWTSTLI PLP CRNYV  QAC
Sbjct  27   NEDCTPWTSTLITPLPSCRNYVEEQAC 53

Sequence Alignment: 3. Allergen Name: Tri a 40.0101 Sequence ID: Q41540

 Score = 50.8 bits 176,  Expect = 3e-09
 Identities = 23/27 85%, Positives = 23/27 85%, Gaps = 0/27 0%
Query  1    NEDCTPWTSTLIXPLPXCRNYVXXQAC 27
            NEDCTPWTSTLI PLP CRNYV  QAC
Sbjct  27   NEDCTPWTSTLITPLPSCRNYVEEQAC 53

Sequence Alignment: 4. Allergen Name: Tri a TAI Sequence ID: CAA34709

 Score = 48.1 bits 165,  Expect = 2e-08
 Identities = 21/27 77%, Positives = 22/27 81%, Gaps = 0/27 0%
Query  1    NEDCTPWTSTLIXPLPXCRNYVXXQAC 27
            NEDCTPW STLI PLP CR+YV  QAC
Sbjct  27   NEDCTPWMSTLITPLPSCRDYVEQQAC 53

Sequence Alignment: 5. Allergen Name: Hor v 1 Sequence ID: CAA49556

 Score = 44.9 bits 152,  Expect = 2e-07
 Identities = 19/27 70%, Positives = 22/27 81%, Gaps = 0/27 0%
Query  1    NEDCTPWTSTLIXPLPXCRNYVXXQAC 27
            +EDCTPWT+T I PLP CR+YV  QAC
Sbjct  27   SEDCTPWTATPITPLPSCRDYVEQQAC 53

SDAP Home Page | Search SDAP | SDAP Manual | SDAP FAQ | Contact  
UTMB | Search | Directories | UTMB Map | News | Employment | Sitemap 
This site published by Surendra Negi
Copyright   2001-2023  The University of Texas Medical Branch. Please review our privacy policy and Internet guidelines.