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                SDAP 2.0 - Structural Database of Allergenic Proteins
Go to: SDAP All allergens       Go to: SDAP Food allergens
Send a comment to Werner Braun      Submit new allergen information to SDAP
  
Alphabetical listing of allergens: A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Access to SDAP is available free of charge for Academic and non-profit use.< Licenses for commercial use can be obtained by contacting W. Braun (webraun@utmb.edu). Secure access to SDAP is available from https://fermi.utmb.edu/SDAP

Allergen Info Description
Allergen ID 43
Allergen Scientific Name Bet v 3
Allergen Species - Systematic Name Betula verrucosa (Betula pendula)
Allergen Species - Common Name White birch
Allergen Common source tree
Allergen Common name Fagales
Allergen Keywords Calcium-binding protien
Allergen IUIS (Yes=1, No=0) 1
ID Allergen Name
Bet v 3 - References
ID Reference
Pubmed ID: 7520389
Seiberler S, Scheiner O, Kraft D, Lonsdale D, Valenta R. Characterization of a birch pollen allergen, Bet v III, representing a novel class of Ca2+ binding proteins: specific expression in mature pollen and dependence of patients' IgE binding on protein-bound Ca2+. EMBO J. 1994 Aug 1;13(15):3481-6.
Bet v 3 - Protein Sequences
Source Link to source
SwissProt P43187
Bet v 3 - Theoretical Model Structure
Model ID PDB file PDB Snapshot PDB Snapshot 90 PDB Snapshot 180 PDB Snapshot 270 3D PDB View
60 GetModel Model Pic Model Pic Model Pic Model Pic Click here
Bet v 3 - Sequence Search :
Sequence Header Sequence
Bet v 3
SDAP Sequence ID: 60
SDAP Allergen ID: 43
MPCSTEAMEKAGHGHASTPRKRSLSNSSFRLRSESLNTLRLRRIFDLFDKNSDGIITVDELSRALNLLGLETDLSELESTVKSFTREGNIGLQFEDFISLHQSLNDSYFAYGGEDEDDNEEDMRKSILSQEEADSFGGFKVFDEDGDGYISARELQMVLGKLGFSEGSEIDRVEKMIVSVDSNRDGRVDFFEFKDMMRSVLVRSS
View 3D Structure Click here to view 3D model structure of allergen
Fasta Search in SDAP
Blast Swissprot database search at NCBI
Blast PDB database search at NCBI
Blast NR database search at NCBI
Bet v 3 - Statistics from Alphafold ( SI is sequence id, Best template format: PDB_ChainID)
Allergen Name pLDDT Score pTM Score Best PDB template %Seq ID Align length Seq length Query Range Sequence Range E-Value Bit Score Download Model
Bet v 3 69.3 0.42 5DOW_A 31.214 173 205 28 - 199 1 - 147 1.97e-17 76.6 Download (SI: 60)
Bet v 3 - Alphafold Theoretical Model Structure
Model Structure
60_relaxed_rank_1_model_3.pdb


Coverage Plddt
Bet v 3 - Protein Sequence Properties!
Protein Sequence Protease cleavage sites PeptideCutter at ExPASy
P43187 Click here to process the data
Bet v 3 - PFAM Information
SeqID Aller ID AlnS AlnE EnvS EnvE PFAM ID Family Type Clan Description
60 43 41 66 40 68 PF00036 EF-hand_1 Domain CL0220 EF hand
60 43 139 198 134 198 PF13499 EF-hand_7 Domain CL0220 EF-hand domain pair
Where: AlnS= Alignment start position, AlnE= Alignment end position, EnvS= Envelope start position, EnvE= Envelope end position.

List of B-cell epitopes predicted by BepiPred method using a window size of 9 amino acids

Cleck here for epitopes predicted by BepiPred method
Bet v 3 - Epitope Information from published data
No. Position Epitope Sequence Epitope Type View epitope Search epitope in SDAP PD search in SDAP Cross-React search
No epitope information found!
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