The University of Texas Medical Branch
Department of Biochemistry and Molecular Biology Sealy Center for Structural Biology Computational Biology


SDAP Home Page
SDAP Overview

Use SDAP
SDAP All
SDAP Food

SDAP Tools
FAO/WHO Allergenicity Test
FASTA Search in SDAP
Peptide Match
Peptide Similarity
Peptide-Protein PD Index
Aller_ML, Allergen Markup Language
List SDAP

About SDAP
General Information
Manual
FAQ
Publications
Who Are We
Advisory Board
New Allergen Submission form

Allergy Links

Our Software Tools
MPACK
FANTOM
GETAREA
InterProSurf
EpiSearch

Allergen Databases
WHO/IUIS Allergen Nomenclature database
FARRP Allergen Protein Database (University of Nebraska)
Allergen Database for Food Safety (ADFS)
COMPARE database
ALLFAM (Medical University of Vienna)
Allermatch (Wageninen University)
Allergome Database

Protein Databases
PDB
MMDB - Entrez
SWISS-PROT
NCBI - Entrez
PIR

Protein Classification
CATH
FSSP
iProClass
ProtoMap
SCOP
VAST

Bioinformatics Servers
BLAST @ NCBI
FASTA @ EMBL-EBI
Peptide Match @ PIR
ClustalW @ EMBL - EBI


                SDAP 2.0 - Structural Database of Allergenic Proteins
Go to: SDAP All allergens       Go to: SDAP Food allergens
Send a comment to Werner Braun      Submit new allergen information to SDAP
  
Alphabetical listing of allergens: A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Access to SDAP is available free of charge for Academic and non-profit use.< Licenses for commercial use can be obtained by contacting W. Braun (webraun@utmb.edu). Secure access to SDAP is available from https://fermi.utmb.edu/SDAP

Allergen Info Description
Allergen ID 533
Allergen Scientific Name Cha o 1
Allergen Species - Systematic Name Chamaecyparis obtusa
Allergen Species - Common Name Japanese cypress
Allergen Common source tree
Allergen Common name Pinales
Allergen Keywords pectate lyase
Allergen IUIS (Yes=1, No=0) 0
ID Allergen Name
Cha o 1 - References
ID Reference
No reference found!
Cha o 1 - Protein Sequences
Source Link to source
SwissProt Q96385
Cha o 1 - Theoretical Model Structure
Model ID PDB file PDB Snapshot PDB Snapshot 90 PDB Snapshot 180 PDB Snapshot 270 3D PDB View
87 GetModel Model Pic Model Pic Model Pic Model Pic Click here
Cha o 1 - Sequence Search :
Sequence Header Sequence
Cha o 1
SDAP Sequence ID: 87
SDAP Allergen ID: 533
MASCTLLAVLVFLCAIVSCFSDNPIDSCWRGDANWDQNRMKLADCAVGFGSSAMGGKGGAFYTVTSSDDDPVNPAPGTLRYGATRERSLWIIFSKNLNIKLNMPLYIAGNKTIDGRGAEVHIGNGGPCLFMRTVSHVILHGLNIHGCNTSVSGNVLISEASGVVPVHAQDGDAITMRNVTDVWIDHNSLSDSSDGLVDVTLASTGVTISNNHFFNHHKVMLLGHSDIYSDDKSMKVTVAFNQFGPNAGQRMPRARYGLIHVANNNYDPWSIYAIGGSSNPTILSEGNSFTAPNDSDKKEVTRRVGCESPSTCANWVWRSTQDSFNNGAYFVSSGKNEGTNIYNNNEAFKVENGSAAPQLTKNAGVLTCILSKPCS
View 3D Structure Click here to view 3D model structure of allergen
Fasta Search in SDAP
Blast Swissprot database search at NCBI
Blast PDB database search at NCBI
Blast NR database search at NCBI
Cha o 1 - Statistics from Alphafold ( SI is sequence id, Best template format: PDB_ChainID)
Allergen Name pLDDT Score pTM Score Best PDB template %Seq ID Align length Seq length Query Range Sequence Range E-Value Bit Score Download Model
Cha o 1 94.35 0.85 1PXZ_A 85.838 346 375 22 - 367 1 - 346 0 635 Download (SI: 87)
Cha o 1 - Alphafold Theoretical Model Structure
Model Structure
87_relaxed_rank_1_model_1.pdb


Coverage Plddt
Cha o 1 - Protein Sequence Properties!
Protein Sequence Protease cleavage sites PeptideCutter at ExPASy
Q96385 Click here to process the data
Cha o 1 - PFAM Information
SeqID Aller ID AlnS AlnE EnvS EnvE PFAM ID Family Type Clan Description
87 533 107 289 100 289 PF00544 Pectate_lyase_4 Repeat CL0268 Pectate lyase
Where: AlnS= Alignment start position, AlnE= Alignment end position, EnvS= Envelope start position, EnvE= Envelope end position.

List of B-cell epitopes predicted by BepiPred method using a window size of 9 amino acids

Cleck here for epitopes predicted by BepiPred method
Cha o 1 - Epitope Information from published data
No. Position Epitope Sequence Epitope Type View epitope Search epitope in SDAP PD search in SDAP Cross-React search
1 32-51 DANWDQNRMKLADCAVGFGS T-cell Click here to find exact epitope Click here to find similar epitopes Click here for Cross-React search
2 82-101 GATRERSLWIIFSKNLNIKL T-cell Click here to find exact epitope Click here to find similar epitopes Click here for Cross-React search
3 92-111 IFSKNLNIKLNMPLYIAGNK T-cell Click here to find exact epitope Click here to find similar epitopes Click here for Cross-React search
4 212-231 HFFNHHKVMLLGHSDIYSDD T-cell Click here to find exact epitope Click here to find similar epitopes Click here for Cross-React search
5 232-251 KSMKVTVAFNQFGPNAGQRM T-cell Click here to find exact epitope Click here to find similar epitopes Click here for Cross-React search
6 252-271 PRARYGLIHVANNNYDPWSI T-cell Click here to find exact epitope Click here to find similar epitopes Click here for Cross-React search
7 272-291 YAIGGSSNPTILSEGNSFTA T-cell Click here to find exact epitope Click here to find similar epitopes Click here for Cross-React search
8 332-351 SSGKNEGTNIYNNNEAFKVE T-cell Click here to find exact epitope Click here to find similar epitopes Click here for Cross-React search
9 342-361 YNNNEAFKVENGSAAPQLTK T-cell Click here to find exact epitope Click here to find similar epitopes Click here for Cross-React search
10 352-371 NGSAAPQLTKNAGVLTCILS T-cell Click here to find exact epitope Click here to find similar epitopes Click here for Cross-React search
87_relaxed_rank_1_model_1.pdb



Epitope Reference ( ID 31): T. Sone, K. Dairiki, K. Morikubo, K. Shimizu, H. Tsunoo, T. Mori, and K. Kino, Identification of human T cell epitopes in Japanese cypress pollen allergen, Cha o 1, elucidates the intrinsic mechanism of cross-allergenicity between Cha o 1 and Cry j 1, the major allergen of Japanese cedar pollen, at the T cell level. Clin. Exp. Allergy 2005, 35, 664-671.
SDAP Home Page | Search SDAP | SDAP Manual | SDAP FAQ | Contact  
UTMB | Search | Directories | UTMB Map | News | Employment | Sitemap 
This site published by Surendra Negi
Copyright   2001-2023  The University of Texas Medical Branch. Please review our privacy policy and Internet guidelines.