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Department of Biochemistry and Molecular Biology Sealy Center for Structural Biology Computational Biology



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                SDAP 2.0 - Structural Database of Allergenic Proteins
Go to: SDAP All allergens       Go to: SDAP Food allergens
Send a comment to Werner Braun      Submit new allergen information to SDAP
  
Alphabetical listing of allergens: A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Access to SDAP is available free of charge for Academic and non-profit use.< Licenses for commercial use can be obtained by contacting W. Braun (webraun@utmb.edu). Secure access to SDAP is available from https://fermi.utmb.edu/SDAP

Allergen Info Description
Allergen ID 1653
Allergen Scientific Name Coc n 1.0101
Allergen Species - Systematic Name Cocos nucifera
Allergen Species - Common Name Coconut
Allergen Common source tree
Allergen Common name Plantae Liliopsida
Allergen Keywords vicilin-like protein [Cocos nucifera]
Allergen IUIS (Yes=1, No=0) 1
Coc n 1.0101 - References
ID Reference
Pubmed ID: 26426307
Saha B, Sircar G, Pandey N, Gupta Bhattacharya S. Mining Novel Allergens from Coconut Pollen Employing Manual De Novo Sequencing and Homology-Driven Proteomics. J Proteome Res. 2015 Nov 6;14(11):4823-33. doi: 10.1021/acs.jproteome.5b00657. Epub 2015 Oct 14. PMID: 26426307.
Coc n 1.0101 - Protein Sequences
Source Link to source
GenBank A0A0S3B0K0
Coc n 1.0101 - Sequence Search :
Sequence Header Sequence
Coc n 1.0101
SDAP Sequence ID: 1420
SDAP Allergen ID: 1653
MVSAMGDRTASAILALLLLSSWSLMVVMAYQGRGMEGREKRVEEKAPRSPEDRGLFILRRSKEVLKTDAGEVRLMMGYRYRGNHSPMHIGFITMEPNTLYIPQYIDASLILFVRRGEAKVGYIYKNKLVEKRLKSGYVDAIPAGSSFYIVNSDKSERLHIICSIDTLESMEYYGAYPQSFYVGGGVLPRSVLSGFDASTLSAAFNVSSDQLEMILNSQRGGPIIRLNGEAAEQRDYLSSIMQLKERMVQEKEMDSDDDDEAEQEEDDVWTWRCLLKSLLGKGDCRVQRKHKLAHSPGSYNLYDTEPSYQNDYGYSIAIDGHDYSALKHSNLGVYLVNLKAGAMLSPHVNPTATEYGIILRGSGTIQVVFPNGTAAMNAKVSEGDVFWIPRYFPFCQIASDGAPLEFFGFTTSARKNRPQFLVGKSSLLHSMRGPELAAAFGVSEEQLERIVKAQREAVILPTSPHREMEEINGKKWKGEEVLVMKRGLFA
View 3D Structure Click here to view 3D model structure of allergen
Fasta Search in SDAP
Blast Swissprot database search at NCBI
Blast PDB database search at NCBI
Blast NR database search at NCBI
Coc n 1.0101 - Statistics from Alphafold ( SI is sequence id, Best template format: PDB_ChainID)
Allergen Name pLDDT Score pTM Score Best PDB template %Seq ID Align length Seq length Query Range Sequence Range E-Value Bit Score Download Model
Coc n 1.0101 77.6 0.73 4LEJ_A 28.2 461 490 37 - 467 1 - 398 1.61149e-43 159 Download (SI: 1420)
Coc n 1.0101 - Alphafold Theoretical Model Structure
Model Structure
1420_relaxed_rank_1_model_1.pdb


Coverage Plddt
Coc n 1.0101 - Protein Sequence Properties!
Protein Sequence Protease cleavage sites PeptideCutter at ExPASy
A0A0S3B0K0 Click here to process the data
Coc n 1.0101 - PFAM Information
SeqID Aller ID AlnS AlnE EnvS EnvE PFAM ID Family Type Clan Description
1420 1653 63 163 56 211 PF00190 Cupin_1 Domain CL0029 Cupin
1420 1653 299 446 299 448 PF00190 Cupin_1 Domain CL0029 Cupin
Where: AlnS= Alignment start position, AlnE= Alignment end position, EnvS= Envelope start position, EnvE= Envelope end position.

List of B-cell epitopes predicted by BepiPred method using a window size of 9 amino acids

Cleck here for epitopes predicted by BepiPred method
Coc n 1.0101 - Epitope Information from published data
No. Position Epitope Sequence Epitope Type View epitope Search epitope in SDAP PD search in SDAP Cross-React search
No epitope information found!
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