The University of Texas Medical Branch
Department of Biochemistry and Molecular Biology Sealy Center for Structural Biology Computational Biology


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                SDAP 2.0 - Structural Database of Allergenic Proteins
Go to: SDAP All allergens       Go to: SDAP Food allergens
Send a comment to Werner Braun      Submit new allergen information to SDAP
  
Alphabetical listing of allergens: A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Access to SDAP is available free of charge for Academic and non-profit use.< Licenses for commercial use can be obtained by contacting W. Braun (webraun@utmb.edu). Secure access to SDAP is available from https://fermi.utmb.edu/SDAP

Allergen Info Description
Allergen ID 652
Allergen Scientific Name Fag e 1
Allergen Species - Systematic Name Fagopyrum esculentum
Allergen Species - Common Name common buckwheat
Allergen Common source foods
Allergen Common name
Allergen Keywords 13S globulin seed storage protein 3, legumin-like protein 3
Allergen IUIS (Yes=1, No=0) 0
ID Allergen Name
Fag e 1 - References
ID Reference
No reference found!
Fag e 1 - Protein Sequences
Source Link to source
GenBank 29839419
GenBank 2317670
GenBank 2317674
Fag e 1 - Theoretical Model Structure
Model ID PDB file PDB Snapshot PDB Snapshot 90 PDB Snapshot 180 PDB Snapshot 270 3D PDB View
609 GetModel Model Pic Model Pic Model Pic Model Pic Click here
Fag e 1 - Sequence Search :
Sequence Header Sequence
Fag e 1
SDAP Sequence ID: 533
SDAP Allergen ID: 652
MSTKLILSFSLCLMVLSCSAQLLPWQKGQRSRPHHGHQQFQHQCDIQRLTASEPSRRVRSEAGVTEIWDHDTPEFRCAGFVAVRVVIQPGGLLLPSYSNAPYITFVEQGRGVQGVVVPGCPETFQSGSEFEYPRSQRDQRSRQSESGESSRGDQRSRQSESEESSRGDQRSRQSESEEFSRGDQHQKIFRIRDGDVIPSPAGVVQWTHNNGDNDLISITLYDANSFQNQLDENVRNFFLAGQSKQSREDRRSQRQTREEGSDRQSRESQDDEALLEANILSGFEDEILQEIFRNVDQETISKLRGENDQRGFIVQARDLKLRVPEEYEEELQRERGDRKRGGSGRSNGLEQAFCNLKFRQNVNRPSRADVFNPRAGRINTVDSNNLPILEFIQLSAQHVVLYKNAILGPRWNLNAHSALYVTRGEGRVQVVGDEGRSVFDDNVQRGQILVVPQGFAVVLKAGREGLEWVELKNDDNAITSPIAGKTSVLRAIPVEVLANSYDISTKEAFRLKNGRQEVEVFRPFQSRDEKERERFSIV
View 3D Structure Click here to view 3D model structure of allergen
Fasta Search in SDAP
Blast Swissprot database search at NCBI
Blast PDB database search at NCBI
Blast NR database search at NCBI
Fag e 1
SDAP Sequence ID: 608
SDAP Allergen ID: 652
MSTKLILSFSLCLMVLSCSAQLLPWRKGQRSRPHRGHQQFHHQCDVQRLTASEPSRRVRSEAGVTEIWDNDTPEFRCAGFVAVRVVIQPGGLLLPSYSNAPYITFVEQGRGVQGVVVPGCPETFQSESEFEYPQSQRDQRSRQSESEESSRGDQRTRQSESEEFSRGDQRTRQSESEEFSRGDQRTRQSESEEFSRGDQRTRQSESEEFSRGDQHQKIFRIRDGDVIPSPAGVVQWTHNDGDNDLISITLYDANSFQNQLDGNVRNFFLAGQSKQSREDRRSQRQTREEGSDRQSRESDDDEALLEANILTGFQDEILQEIFRNVDQETISKLRGDNDQRGFIVQARDLKLRVPEEYEEELQRERGDRKRGGSGRSNGLEQAFCNLKFKQNVNRPSRADVFNPRAGRINTVNSNNLPILEFIQLSAQHVVLYKNAILGPRWNLNAHSALYVTRGEGRVQVVGDEGRSVFDDNVQRGQILVVPQGFAVVLKAGREGLEWVELKNDDNAITSPIAGKTSVLRAIPVEVLANSYDISTKEAFRLKNGRQEVEVFLPFQSRDEKERERF
View 3D Structure Click here to view 3D model structure of allergen
Fasta Search in SDAP
Blast Swissprot database search at NCBI
Blast PDB database search at NCBI
Blast NR database search at NCBI
Fag e 1
SDAP Sequence ID: 609
SDAP Allergen ID: 652
MSTKLILSFSLCLMVLSCSAQLWPWQKGQGSRPHHGRQQHQFQHQCDIQRLTASEPSRRVRSEAGVTEIWDHDTPEFRCTGFVAVRVVIQPGGLLLPSYSNAPYITFVEQGRGVQGVVIPGCPETFQSDSEFEYPQSQRGRHSRQSESEEESSRGDQHQKIFRIREGDVIPSPAGVVQWTHNDGNDDLISVTLLDANSYHKQLDENVRSFFLAGQSQRETREEGSDRQSRESDDDEALLGANILSGFQDEILHELFRDVDRETISKLRGENDQRGFIVQAQDLKLRVPQDFEEEYERERGDRRRGQGGSGRSNGVEQGFCNLKFRRNFNTPTNTYVFNPRAGRINTVNSNSLPILEFLQLSAQHVVLYKNAIIGPRWNLNAHSALYVTRGEGRVQVVGDEGKSVFDDKVQRGQILVVPQGFAVVLKAGREGLEWVELKNSGNAITSPIGGRTSVLRAIPVEVLANSYDISTKEAYKLKNGRQEVEVFRPFQSRDEKERERFSIV
View 3D Structure Click here to view 3D model structure of allergen
Fasta Search in SDAP
Blast Swissprot database search at NCBI
Blast PDB database search at NCBI
Blast NR database search at NCBI
Fag e 1 - Statistics from Alphafold ( SI is sequence id, Best template format: PDB_ChainID)
Allergen Name pLDDT Score pTM Score Best PDB template %Seq ID Align length Seq length Query Range Sequence Range E-Value Bit Score Download Model
Fag e 1 76.55 0.71 3QAC_A 38.889 522 565 42 - 551 12 - 450 0 363 Download (SI: 608)
Fag e 1 79 0.75 6B4S_A 44.398 482 538 42 - 521 1 - 425 0 381 Download (SI: 533)
Fag e 1 81.75 0.8 6B4S_A 46.325 449 504 44 - 487 1 - 425 0 375 Download (SI: 609)
Fag e 1 - Alphafold Theoretical Model Structure
Model Structure
609_relaxed_rank_1_model_1.pdb


Coverage Plddt
Fag e 1 - Protein Sequence Properties!
Protein Sequence Protease cleavage sites PeptideCutter at ExPASy
29839419 Click here to process the data
2317670 Click here to process the data
2317674 Click here to process the data
Fag e 1 - PFAM Information
SeqID Aller ID AlnS AlnE EnvS EnvE PFAM ID Family Type Clan Description
533 652 50 243 49 245 PF00190 Cupin_1 Domain CL0029 Cupin
533 652 361 507 360 508 PF00190 Cupin_1 Domain CL0029 Cupin
608 652 50 272 49 275 PF00190 Cupin_1 Domain CL0029 Cupin
608 652 391 537 390 538 PF00190 Cupin_1 Domain CL0029 Cupin
609 652 52 215 51 218 PF00190 Cupin_1 Domain CL0029 Cupin
609 652 327 473 326 474 PF00190 Cupin_1 Domain CL0029 Cupin
Where: AlnS= Alignment start position, AlnE= Alignment end position, EnvS= Envelope start position, EnvE= Envelope end position.

List of B-cell epitopes predicted by BepiPred method using a window size of 9 amino acids

Cleck here for epitopes predicted by BepiPred method
Fag e 1 - Epitope Information from published data
No. Position Epitope Sequence Epitope Type View epitope Search epitope in SDAP PD search in SDAP Cross-React search
1 360-367 QNVNRPSR IgE Click here to find exact epitope Click here to find similar epitopes Click here for Cross-React search
2 384-391 NNLPILEF IgE Click here to find exact epitope Click here to find similar epitopes Click here for Cross-React search
3 411-416 WNLNAH IgE Click here to find exact epitope Click here to find similar epitopes Click here for Cross-React search
4 434-439 EGRSVF IgE Click here to find exact epitope Click here to find similar epitopes Click here for Cross-React search
5 460-465 KAGNEG IgE Click here to find exact epitope Click here to find similar epitopes Click here for Cross-React search
6 482-491 IAGKTSVLRA IgE Click here to find exact epitope Click here to find similar epitopes Click here for Cross-React search
7 506-511 KEAFRL IgE Click here to find exact epitope Click here to find similar epitopes Click here for Cross-React search
8 526-535 SRDEKERERF IgE Click here to find exact epitope Click here to find similar epitopes Click here for Cross-React search
609_relaxed_rank_1_model_1.pdb



Epitope Reference ( ID 29): H. Yoshioka, T. Ohmoto, A. Urisu, Y. Mine, and T. Adachi, Expression and epitope analysis of the major allergenic protein Fag e 1 from buckwheat, J. Plant. Physiol. 2004, 161, 761-767.
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