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                SDAP 2.0 - Structural Database of Allergenic Proteins
Go to: SDAP All allergens       Go to: SDAP Food allergens
Send a comment to Werner Braun      Submit new allergen information to SDAP
  
Alphabetical listing of allergens: A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Access to SDAP is available free of charge for Academic and non-profit use.< Licenses for commercial use can be obtained by contacting W. Braun (webraun@utmb.edu). Secure access to SDAP is available from https://fermi.utmb.edu/SDAP

Allergen Info Description
Allergen ID 1970
Allergen Scientific Name Gos h 3
Allergen Species - Systematic Name Gossypium hirsutum
Allergen Species - Common Name Cotton
Allergen Common source Plant
Allergen Common name Plantae Magnoliopsida
Allergen Keywords Seed storage protein, Legumin A
Allergen IUIS (Yes=1, No=0) 0
ID Allergen Name
Gos h 3 - References
ID Reference
Pubmed ID: 16668521
Galau GA, Wang HY, Hughes DW. Sequence of the Gossypium hirsutum D-Genome Alloallele of Legumin A and Its mRNA. Plant Physiol. 1991 Nov;97(3):1268-70. doi: 10.1104/pp.97.3.1268. PMID: 16668521; PMCID: PMC1081154.
Gos h 3 - Protein Sequences
Source Link to source
SwissProt P09802
Gos h 3 - Sequence Search :
Sequence Header Sequence
Gos h 3
SDAP Sequence ID: 1714
SDAP Allergen ID: 1970
MAINPSLLFLSLLFLFNGCLARQTFSSQQSQNECQINRLRASAPQTRIRSEAGTTEWWNPNCQQLRCAGVSVMRQTIEPNGLVLPSFTNAPQLLYIVQGRGIQGIVMPGCAETFQDSQQWQHQSRGRFQDQHQKVRRFRQGDIIALPQGVVHWSYNDGNERVVTINLLDTGNSANQLDNIPRRFHLAGNPEEEQRQLRRLAQQMQGRSERGEESEEEEGEGEEEEEEDNPSRRSRHQEEEEQGRESSSCNNLLCAFDRNFLAQAFNVDHDIIRKIQRVRGNRGTIIRVRDRLQVVTPPRMEEEEREERQQEQRYRHTRGGSQDNGLEETFCSMRIKENLADPERADIFNPQAGRISTLNRFNLPILQRLELSAERGVLYNRAGLIPQWNVNAHKILYMLRGCARVQVVNHNGDAVFDDNVEQGQLLTVPQNFAFMKQAGNEGAEWISFFTNSEATNTPMAGSVSFMRALPEEVVAASYQVSREDARRIKFNNKNTFFFTPSQSERRADA
View 3D Structure Click here to view 3D model structure of allergen
Fasta Search in SDAP
Blast Swissprot database search at NCBI
Blast PDB database search at NCBI
Blast NR database search at NCBI
Gos h 3 - Statistics from Alphafold ( SI is sequence id, Best template format: PDB_ChainID)
Allergen Name pLDDT Score pTM Score Best PDB template %Seq ID Align length Seq length Query Range Sequence Range E-Value Bit Score Download Model
Gos h 3 82 0.76 3QAC_A 44.8 500 509 25 - 506 5 - 459 0 416 Download (SI: 1714)
Gos h 3 - Alphafold Theoretical Model Structure
Model Structure
1714_relaxed_rank_1_model_1.pdb


Coverage Plddt
Gos h 3 - Protein Sequence Properties!
Protein Sequence Protease cleavage sites PeptideCutter at ExPASy
P09802 Click here to process the data
Gos h 3 - PFAM Information
SeqID Aller ID AlnS AlnE EnvS EnvE PFAM ID Family Type Clan Description
1714 1970 41 191 39 192 PF00190 Cupin_1 Domain CL0029 Cupin
1714 1970 338 484 337 486 PF00190 Cupin_1 Domain CL0029 Cupin
Where: AlnS= Alignment start position, AlnE= Alignment end position, EnvS= Envelope start position, EnvE= Envelope end position.

List of B-cell epitopes predicted by BepiPred method using a window size of 9 amino acids

Cleck here for epitopes predicted by BepiPred method
Gos h 3 - Epitope Information from published data
No. Position Epitope Sequence Epitope Type View epitope Search epitope in SDAP PD search in SDAP Cross-React search
No epitope information found!
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