SDAP Home Page
SDAP Overview
SDAP All
SDAP Food
Use SDAP All
Search SDAP All
List SDAP All
SDAP Food
SDAP Tools
FAO/WHO Allergenicity Test
FASTA Search in SDAP
Peptide Match
Peptide Similarity
Peptide-Protein PD Index
Aller_ML, Allergen Markup Language
List SDAP
About SDAP
General Information
Manual
FAQ
Publications
Who Are We
Advisory Board
Allergy Links
Our Software Tools
MPACK
FANTOM
GETAREA
NOAH/DIAMOD
MASIA
PCPMer
InterProSurf
EpiSearch
Protein Databases
PDB
MMDB - Entrez
SWISS-PROT
NCBI - Entrez
PIR
Protein Classification
CATH
CE
FSSP
iProClass
ProtoMap
SCOP
TOPS
VAST
Bioinformatics Servers
@TOME
BLAST @ NCBI
BLAST @ PIR
FASTA @ PIR
Peptide Match @ PIR
ClustalW @ BCM
ClustalW @ EMBL - EBI
ClustalW @ PIR
Bioinformatics Tools
Cn3D
MolMol
Bioinformatics Links
Bioinformatics Links Directory
|
SDAP - All Allergens
Full FASTA alignment
Sequence name: Query sequence: MSIHIKDVEDLTARLTEAGDKLVVIDFMATWCGPCKIIGPKLDEIAAEMA DSIVVVKVDVDECEDIATEYSINTMPTFVFVKNGKPVEQFSGANVEKLRS TILKLK
Alignment made with FASTA 3.45 As explained in the FASTA manual, the bit score is equivalent to the bit score reported by BLAST. A 1 bit increase in score corresponds to a 2-fold reduction in expectation, and a 10-bit increase implies 1000-fold lower expectation. Sequences with E values < 0.01 are almost always homologous.
Alignment 1 Sequence 1: Sequence 2: Allergen Plo i 2.0101, Sequence: CBW45298 Sequence identity: 100.00 (106/106) Sequence 1 MSIHIKDVEDLTARLTEAGDKLVVIDFMATWCGPCKIIGPKLDEIAAEMA MSIHIKDVEDLTARLTEAGDKLVVIDFMATWCGPCKIIGPKLDEIAAEMA Sequence 2 MSIHIKDVEDLTARLTEAGDKLVVIDFMATWCGPCKIIGPKLDEIAAEMA
Sequence 1 DSIVVVKVDVDECEDIATEYSINTMPTFVFVKNGKPVEQFSGANVEKLRS DSIVVVKVDVDECEDIATEYSINTMPTFVFVKNGKPVEQFSGANVEKLRS Sequence 2 DSIVVVKVDVDECEDIATEYSINTMPTFVFVKNGKPVEQFSGANVEKLRS
Sequence 1 TILKLK TILKLK Sequence 2 TILKLK
Alignment 2 Sequence 1: Sequence 2: Allergen Mala s 13.0101, Sequence: CAI78451 Sequence identity: 43.40 (46/106) Sequence 1 MSIHIKDVEDLTARLTEAGDKLVVIDFMATWCGPCKIIGPKLDEIAAEMA ------------------GDK-VVIDF-ATWCGPCK-IGP----I----A Sequence 2 ---VQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPA
Sequence 1 -DSIVVVKVDVDECEDIATEYSINTMPTFVFVKNGKPVEQFSGANVEKLR -D-----KVDVDE---IA-E--I--MPTFVF-KNG-------GA---KL- Sequence 2 GDKVGFYKVDVDEQSQIAQEVGIRAMPTFVFFKNGQKIDTVVGADPSKLQ
Sequence 1 STILKLK- --I----- Sequence 2 AAITQHSA
Alignment 3 Sequence 1: Sequence 2: Allergen Cop c 2, Sequence: Q9UW02 Sequence identity: 38.68 (41/106) Sequence 1 MSIHIKDVEDLTARLTEAGDKLVVIDFMATWCGPCKIIGPKLDEIAAEM- ---------D----LT--G-K---IDF-ATWCGPC--I-P---------- Sequence 2 -MVQVISNLDEFNKLTNSG-KIIIIDFWATWCGPCRVISPIFEKFSEKYG
Sequence 1 ADSIVVVKVDVDECEDIATEYSINTMPTFVFVKNGKPVEQFSGANVEKLR A--IV--KVDVD---DI--E--I--MPTF---K-G-------GAN---L- Sequence 2 ANNIVFAKVDVDTASDISEEAKIRAMPTFQVYKDGQKIDELVGANPTALE
Sequence 1 STILKLK- S---K--- Sequence 2 SLVQKSLA
Alignment 4 Sequence 1: Sequence 2: Allergen Tri a 25.0101, Sequence: Q9LDX4 Sequence identity: 39.62 (42/106) Sequence 1 ----------------MSIHIKDVEDLTARLTEA--GDKLVVIDFMATWC ------------------I-----E--T----EA----KLVVIDF-A-WC Sequence 2 MAASAATATAAAVGAGEVISVHSLEQWTMQIEEANAAKKLVVIDFTASWC
Sequence 1 GPCKIIGPKLDEIAAEMADSIVVVKVDVDECEDIATEYSINTMPTFVFVK GPC-I--P-----A-------V--KVDVDE---IA---S---MPTF-F-K Sequence 2 GPCRIMAPIFADLAKKFP-AAVFLKVDVDELKSIAEQFSVEAMPTFLFMK
Sequence 1 NGKPVEQFSGANVEKLRSTILKLK-- -G-------GA--E-L---------- Sequence 2 EGDVKDRVVGAIKEELTNKVGLHAAQ
Alignment 5 Sequence 1: Sequence 2: Allergen Asp f 28.0101, Sequence: AJ937744 Sequence identity: 36.79 (39/106) Sequence 1 ---MSIHIKDVEDLTARLTEAGDKLVVIDFMATWCGPCKIIGPKLDEIAA ---------D-------LT--G---VV-DF-ATWCGPC----PK--E--- Sequence 2 MSHGKVIAVDNPIIYKALTSSGP--VVVDFFATWCGPCRAVAPKVGELSE
Sequence 1 EMADSIVVVKVDVDECEDIATEYSINTMPTFVFVKNGKPVEQ-FSGANVE ----------VDVD-----A-E--I--MPTFV--K-G-P-E----G-NV- Sequence 2 KYSN-VRFIQVDVDKVRSVAHEMNIRAMPTFVLYKDGQPLEKRVVGGNVR
Sequence 1 KLRSTILKLK- -L---I----- Sequence 2 ELEEMIKSISA
Alignment 6 Sequence 1: Sequence 2: Allergen Zea m 25.0101, Sequence: Q4W1F7 Sequence identity: 37.74 (40/106) Sequence 1 -------------------MSIHIKDVEDLTARLTEAGD--KLVVIDFMA ---------------------I-I---E-------EA----KLVVIDF-A Sequence 2 MAASEAAAAAATPVAPTEGTVIAIHSLEEWSIQIEEANSAKKLVVIDFTA
Sequence 1 TWCGPCKIIGPKLDEIAAEMADSIVVVKVDVDECEDIATEYSINTMPTFV TWC-PC----P-----A-------V--KVDVDE---IA---S---MPTF- Sequence 2 TWCPPCRAMAPIFADMAKK-SPNVVFLKVDVDEMKTIAEQFSVEAMPTFL
Sequence 1 FVKNGKPVEQFSGANVEKLRSTILKLK-- F---G-------GA--E-L---------- Sequence 2 FMREGDVKDRVVGAAKEELARKLELHMAS
Alignment 7 Sequence 1: Sequence 2: Allergen Asp f 29.0101, Sequence: AJ937745 Sequence identity: 33.96 (36/106) Sequence 1 MSIHIKDVED--LTARLTEAGDKLVVIDFMATWCGPCKIIGPKLDEIA-A MS-------D----------G---V--D--ATWCGPCK-I-P-------- Sequence 2 MSHNVEKITDAKVFKEKVQEGSGPVIVDCSATWCGPCKAISPVFQRLSTS
Sequence 1 EMADSIVVVKVDVDECEDIATEYSINTMPTFVFVKNGKPVEQFSGANVEK E----------DVDE----A-E-----MPTF-F-K-G--V----GAN--- Sequence 2 EEFKNAKFYEIDVDELSEVAAELGVRAMPTFMFFKDGQKVNEVVGANPPA
Sequence 1 LRSTILKLK- L---I----- Sequence 2 LEAAIKAHVA
Alignment 8 Sequence 1: Sequence 2: Allergen Fus c 2, Sequence: AAL79931 Sequence identity: 34.91 (37/106) Sequence 1 MSIHIKDVEDLTARLTEAGDKLVVIDFMATWCGPCKIIGPKLDEIAAEMA M--HI-----L---L-------VV-DF-A-WC-PCK-I-P---------- Sequence 2 MVHHITSNDELQKLLSST--TYVVVDFFADWCPPCKAIAPVYEQLSTKHS
Sequence 1 --DSIVVVKVDVDECEDIATEYSINTMPTFVFVKNGKPVEQFSGANVEKL --D-----KV-VD---D-A--Y-I--MPTF-F-K-GK-V-----A----- Sequence 2 VPDVLAFAKVNVDHVQDAAQQYGITAMPTFMFFKEGKQVAVNGQAVIKGA
Sequence 1 RSTILKLK--------------- ----L------------------ Sequence 2 DPRTLGAAAEKLGGLAQKRVAGA
Alignment 9 Sequence 1: Sequence 2: Allergen Alt a 4, Sequence: CAA58999 Sequence identity: 20.75 (22/106) Sequence 1 -------------------------------------------------- -------------------------------------------------- Sequence 2 MTKQALPAVSEVTKDTLEEFKTADKVVLVAYFAADDKASNETFTSVANGL
Sequence 1 -------------------------------------------------- -------------------------------------------------- Sequence 2 RDNFLFGATNDAALAKAEGVKQPGLVCTSPSTTARTSSPRPSMRTYPRLR
Sequence 1 -------------------------------------------------- -------------------------------------------------- Sequence 2 KVASTPLIGEVGPETYAGYMAAGIPLAYIFAETPEEREEFAKELKPLALK
Sequence 1 -------------------------------------------------- -------------------------------------------------- Sequence 2 HKGEINFATIDAKSFGQHAGNLNLKVGTWPAFAIQRTEKNEKFPTNQEAK
Sequence 1 -------------------------------MSIHIKDVEDLTARLTEAG --------------------------------------V----------- Sequence 2 ITEKEIGKFVDDFLAGKIDPSIKSEPIPESNDGPVTVVVAHNYKDVVIDN
Sequence 1 DKLVVIDFMATWCGPCKIIGPKLDEI-----AAEMADSIVVVKVDVDECE DK-V---F-A-WCG-CK---PK--E--------E--------KVD----- Sequence 2 DKDVLVEFYAPWCGHCKALAPKYEELGQLYASDELSKLVTIAKVDAT-LN
Sequence 1 DIATEYSINTMPTFVFVKNGKPVEQFSGANVEKLRSTILKLK-------- D---E------P---F---------------------------------- Sequence 2 DVPDEIQ-GFLPSSLFPLARRMPQSTTLVPHCRGSRPVHRRERLTQASAS
Sequence 1 -------------------------------------------------- -------------------------------------------------- Sequence 2 VGEAVEDATESAKASASSATDSAASAVSEGTETVKSGASVASDSASSAAS
Sequence 1 ----------------------------------- ----------------------------------- Sequence 2 EATKSVKSAASEVTNSASSAASEASASASSVKDEL
|