SDAP Home Page
SDAP Overview
SDAP All
SDAP Food
Use SDAP All
Search SDAP All
List SDAP All
SDAP Food
SDAP Tools
FAO/WHO Allergenicity Test
FASTA Search in SDAP
Peptide Match
Peptide Similarity
Peptide-Protein PD Index
Aller_ML, Allergen Markup Language
List SDAP
About SDAP
General Information
Manual
FAQ
Publications
Who Are We
Advisory Board
Allergy Links
Our Software Tools
MPACK
FANTOM
GETAREA
NOAH/DIAMOD
MASIA
PCPMer
InterProSurf
EpiSearch
Protein Databases
PDB
MMDB - Entrez
SWISS-PROT
NCBI - Entrez
PIR
Protein Classification
CATH
CE
FSSP
iProClass
ProtoMap
SCOP
TOPS
VAST
Bioinformatics Servers
@TOME
BLAST @ NCBI
BLAST @ PIR
FASTA @ PIR
Peptide Match @ PIR
ClustalW @ BCM
ClustalW @ EMBL - EBI
ClustalW @ PIR
Bioinformatics Tools
Cn3D
MolMol
Bioinformatics Links
Bioinformatics Links Directory
|
SDAP - All Allergens
Full FASTA alignment
Sequence name: Query sequence: DSKRDESDSFKRRMESLHDPTSTNLYMEGLPLSIDEPTLAALVSPHRISS SRFFQTRLSHPPRIIAFVRLETRAGAEEIIERLHGRMVRGWNDTGSRISV RFADTAEQRELRRTERAAKEGDLTSSKLTIAQAALLNLRGQELRQATIGT LPVIGERRNLNVTDASYNELPSNALQLPLSQMSRPFEVDYTLAPGRAVPH ITVPTSTNNPISQTYNRPLPRNVEPTLPLAMDQMRSNSTTFRNAQAAYDS YLHQSVTLPNQQYASEDYSVRPGPANAHTGYTATEEFIMRAHVDARRRHG PLDVTAPVRSRRDCDPEATAANISTGVR
No | Allergen | Sequence Link in SwissProt/NCBI/PIR | View Sequence | Sequence Length | bit score | E score | 1 | Cop c 3 | CAB52131 | Go! | 328 | 503.3 | 5.6e-144 |
Alignment made with FASTA 3.45 As explained in the FASTA manual, the bit score is equivalent to the bit score reported by BLAST. A 1 bit increase in score corresponds to a 2-fold reduction in expectation, and a 10-bit increase implies 1000-fold lower expectation. Sequences with E values < 0.01 are almost always homologous.
Alignment 1 Sequence 1: Sequence 2: Allergen Cop c 3, Sequence: CAB52131 Sequence identity: 100.00 (328/328) Sequence 1 DSKRDESDSFKRRMESLHDPTSTNLYMEGLPLSIDEPTLAALVSPHRISS DSKRDESDSFKRRMESLHDPTSTNLYMEGLPLSIDEPTLAALVSPHRISS Sequence 2 DSKRDESDSFKRRMESLHDPTSTNLYMEGLPLSIDEPTLAALVSPHRISS
Sequence 1 SRFFQTRLSHPPRIIAFVRLETRAGAEEIIERLHGRMVRGWNDTGSRISV SRFFQTRLSHPPRIIAFVRLETRAGAEEIIERLHGRMVRGWNDTGSRISV Sequence 2 SRFFQTRLSHPPRIIAFVRLETRAGAEEIIERLHGRMVRGWNDTGSRISV
Sequence 1 RFADTAEQRELRRTERAAKEGDLTSSKLTIAQAALLNLRGQELRQATIGT RFADTAEQRELRRTERAAKEGDLTSSKLTIAQAALLNLRGQELRQATIGT Sequence 2 RFADTAEQRELRRTERAAKEGDLTSSKLTIAQAALLNLRGQELRQATIGT
Sequence 1 LPVIGERRNLNVTDASYNELPSNALQLPLSQMSRPFEVDYTLAPGRAVPH LPVIGERRNLNVTDASYNELPSNALQLPLSQMSRPFEVDYTLAPGRAVPH Sequence 2 LPVIGERRNLNVTDASYNELPSNALQLPLSQMSRPFEVDYTLAPGRAVPH
Sequence 1 ITVPTSTNNPISQTYNRPLPRNVEPTLPLAMDQMRSNSTTFRNAQAAYDS ITVPTSTNNPISQTYNRPLPRNVEPTLPLAMDQMRSNSTTFRNAQAAYDS Sequence 2 ITVPTSTNNPISQTYNRPLPRNVEPTLPLAMDQMRSNSTTFRNAQAAYDS
Sequence 1 YLHQSVTLPNQQYASEDYSVRPGPANAHTGYTATEEFIMRAHVDARRRHG YLHQSVTLPNQQYASEDYSVRPGPANAHTGYTATEEFIMRAHVDARRRHG Sequence 2 YLHQSVTLPNQQYASEDYSVRPGPANAHTGYTATEEFIMRAHVDARRRHG
Sequence 1 PLDVTAPVRSRRDCDPEATAANISTGVR PLDVTAPVRSRRDCDPEATAANISTGVR Sequence 2 PLDVTAPVRSRRDCDPEATAANISTGVR
|